[R-sig-Geo] CRAN releases of sp, rgdal and rgeos

Mon Jun 11 11:15:18 CEST 2018

-------- Message original -------- 
Sujet: Re: [R-sig-Geo] CRAN releases of   sp, rgdal and rgeos 
Date: Lundi 11 Juin 2018 08:24 GMT 
De: "Gilles Benjamin Leduc" <gbl1 using hi.is> 
Pour: Roger.Bivand using nhh.no 

Here it is: 

> sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.5

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RColorBrewer_1.1-2 seqinr_3.4-5      

loaded via a namespace (and not attached):
[1] MASS_7.3-50    compiler_3.4.2 tools_3.4.2    ade4_1.7-11 

installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/utf8/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (utf8)
Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
  unknown timezone 'zone/tz/2018c.1.0/zoneinfo/Europe/Helsinki'
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ correctement décompressé et sommes MD5 vérifiées
configure: CC: clang
configure: CXX: clang++
configure: rgdal: 1.3-2
checking for /usr/bin/svnversion... yes
configure: svn revision: 755
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
checking whether clang++ supports C++11 features by default... no
checking whether clang++ supports C++11 features with -std=gnu++11... yes
configure: C++11 support available
checking for gdal-config... no
no
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rgdal’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/rgdal’

Les packages source téléchargés sont dans
	‘/private/var/folders/j0/gxxcvrr13rgg1xwfmf01yb240000gn/T/RtmpUleCF6/downloaded_packages’
Warning message:
In install.packages(update[instlib == l, "Package"], l, repos = repos,  :
  l'installation du package ‘rgdal’ a eu un statut de sortie non nul

Have a nice Monday

Benjamin  

Le Lundi 11 Juin 2018 07:53 GMT, Roger Bivand <Roger.Bivand using nhh.no> a écrit: 

> On Mon, 11 Jun 2018, Gilles Benjamin Leduc wrote:
> 
> > Good monday!
> >
> > I tried to update rgdal, I get a warning telling me the installation had 
> > a non-null exit status. I haven't cheak if it was working…> 
> Thanks for responding - every user data point helps!
> 
> Could you please provide the output of sessionInfo(), and any error > messages you see on trying to update?
> 
> Roger
> 
> >
> > Benjamin
> >
> >
> > Le Vendredi 8 Juin 2018 18:15 GMT, Roger Bivand <Roger.Bivand using nhh.no> a écrit:
> >
> >> There are new releases of sp, rgdal and rgeos on CRAN. Please install sp
> >> first, then the other two, which link to the installed sp. They all
> >
> >> address so-called rchk issues, which have not so far been a problem, but
> >> might have become more fragile as R's internal memory management is made
> >> even more efficient. This involves compiled code using memory allocated by
> >> R to be freed by R's garbage collector, which has to know if an object is
> >> still being used. Tomas Kalibera, the author of rchk, helped resolve and
> >> explain the issues encountered - what was good coding practice fifteen
> >> years ago isn't always still good practice.
> >>
> >> In addition, the earliest versions of GDAL and PROJ with which rgdal will
> >> work have been updated, and set to PROJ 4.8.0 and GDAL 1.11.4. The current
> >> released versions of PROJ and GDAL are to be prefered, as bugs have been
> >> fixed and new features and drivers introduced. A check has been put
> >
> >> in place to trap attempts to install rgdal without a C++11-capable> >> compiler when the GDAL version is >=2.3.0 - which requires C++11. rgeos is
> >> ready for the forthcoming version of GEOS.
> >>
> >> The CRAN team has also been very supportive of our efforts to bring
> >
> >> compiled code in these packages into rchk compliance.
> >>
> >> Please get in touch if you see any loose ends in these releases.
> >>
> >> Roger
> >>
> >> --
> >> Roger Bivand
> >> Department of Economics, Norwegian School of Economics,
> >> Helleveien 30, N-5045 Bergen, Norway.
> >> voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
> >> http://orcid.org/0000-0003-2392-6140
> >> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
> >>
> >> _______________________________________________
> >> R-sig-Geo mailing list
> >> R-sig-Geo using r-project.org
> >> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >
> >
> >
> >
> >
> 
> -- 
> Roger Bivand
> Department of Economics, Norwegian School of Economics,
> Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
> http://orcid.org/0000-0003-2392-6140
> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en