[R-sig-Geo] MODIS package's runGdal() returns error: dataFormat='GTiff', format not supported

chris english englishchristophera at gmail.com
Wed May 18 07:53:43 CEST 2016 

> ?MODISoptions
> MODIS:::checkTools("GDAL")
Checking availabillity of GDAL:
   OK, GDAL 2.1.0dev, released 2015/99/99 found!
> getOption("MODIS_gdalOutDriver")
[1] name        description extension
<0 rows> (or 0-length row.names)
>
Interestingly not finding even GTiff default. Well, more digging,  but
these outputs explain runGdal error output.

On Tue, May 17, 2016 at 10:07 AM, Hakim Abdi <hakim.abdi at nateko.lu.se>
wrote:

> Same here. Loading rgdal didn't make a difference.
>
> On Tue, May 17, 2016 at 9:05 AM, chris english <
> englishchristophera at gmail.com> wrote:
>
>> I suspect it is an incomplete Modis build even though library(Modis)
>> loads without complaint, but will have to check into this later. I recall
>> not seeing MRT complete...which I think is inscribing a folder though is
>> probably much more.
>> Having rgdal loaded as against your sessionInfo() didn't make a
>> difference.
>> Chris
>>
>> On Tue, May 17, 2016 at 9:52 AM, chris english <
>> englishchristophera at gmail.com> wrote:
>>
>>> Hi Hakim,
>>>
>>> Interesting and unexpected as I am on a linux box but I have the same
>>> problem, or I can reproduce your's:
>>> > sessionInfo()
>>> R version 3.2.2 (2015-08-14)
>>> Platform: x86_64-pc-linux-gnu (64-bit)
>>> Running under: Ubuntu 14.04.4 LTS
>>>
>>> locale:
>>>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>> LC_TIME=en_US.UTF-8
>>>  [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8
>>>  LC_MESSAGES=en_US.UTF-8
>>>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C
>>>
>>> [10] LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8
>>> LC_IDENTIFICATION=C
>>>
>>> attached base packages:
>>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>>
>>> other attached packages:
>>> [1] rgdal_1.1-3   MODIS_0.10-34 raster_2.5-2  sp_1.2-1
>>>
>>> loaded via a namespace (and not attached):
>>> [1] rsconnect_0.4.1.11 tools_3.2.2        Rcpp_0.12.4        grid_3.2.2
>>>         lattice_0.20-33
>>> > dates <- as.POSIXct( as.Date(c("01/01/2010","01/05/2016"),format
>>> ="%d/%m/%Y") )
>>> > dates <- transDate(dates[1],dates[2])
>>> > product <- "MOD13Q1"
>>> > bands <- "010"
>>> > h = c("21","22")
>>> > v = c("07","08")
>>> > runGdal(product=product,begin=dates$beginDOY,end = dates$endDOY,tileH =
>>> + h,tileV = v, SDSstring = bands, outProj="4326")
>>> Error in runGdal(product = product, begin = dates$beginDOY, end =
>>> dates$endDOY,  :
>>>   in argument dataFormat='GTiff', format not supported by GDAL type:
>>> 'gdalWriteDriver()' (column 'name') to list available inputs
>>>
>>> debugonce(runGdal)
>>> #output
>>> Browse[2]> n
>>> debug: stop("in argument dataFormat='", opts$dataFormat, "', format not
>>> supported by GDAL type: 'gdalWriteDriver()' (column 'name') to list
>>> available inputs")
>>> Browse[2]> n
>>> Error in runGdal(product = product, begin = dates$beginDOY, end =
>>> dates$endDOY,  :
>>>   in argument dataFormat='GTiff', format not supported by GDAL type:
>>> 'gdalWriteDriver()' (column 'name') to list available inputs
>>> >
>>> Hmmmm. More digging. Sorry to not be helpful to this point.
>>> Chris
>>>
>>> On Mon, May 16, 2016 at 11:47 AM, Hakim Abdi <hakim.abdi at nateko.lu.se>
>>> wrote:
>>>
>>>> Hi Alex,
>>>>
>>>> The OS is a 64 bit Windows 7 as specified in the sessionInfo() output I
>>>> posted. When I upgraded QGIS, I did so by uninstalling the previous one and
>>>> reinstalling the new version. I'm not quite sure what it means to upgrade
>>>> GDAL since I installed it fresh with OSGeo4W. In R, I reinstall all the
>>>> packages I need fresh off the repository using the install.views command.
>>>>
>>>> gdalDrivers() produces the output that's attached.
>>>>
>>>> Cheers,
>>>>
>>>> Hakim
>>>>
>>>>
>>>> On Wed, May 11, 2016 at 5:09 PM, Alex Mandel <
>>>> tech_dev at wildintellect.com> wrote:
>>>>
>>>>> What operating system?
>>>>> When you upgraded QGIS did you also upgrade GDAL?
>>>>> When you upgraded R, did you update your packages (or rebuild any
>>>>> packages)?
>>>>>
>>>>> What do you get from the following command?
>>>>> gdalDrivers()
>>>>>
>>>>> Thanks,
>>>>> Alex
>>>>>
>>>>> On 05/02/2016 02:11 PM, Hakim Abdi wrote:
>>>>> > Hello everyone,
>>>>> >
>>>>> > I'm having problems with the MODIS package, specifically, the
>>>>> runGdal()
>>>>> > command after the recent update to R 3.2.5. The error I get is this:
>>>>> >
>>>>> > Error in runGdal(product = product, begin = dates$beginDOY, end =
>>>>> > dates$endDOY, : in argument dataFormat='GTiff', format not supported
>>>>> by
>>>>> > GDAL type: 'gdalWriteDriver()' (column 'name') to list available
>>>>> inputs
>>>>> >
>>>>> > I'm not quite sure why this is happening, and I haven't found a
>>>>> solution
>>>>> > online. Does anyone have an idea? The package was working fine
>>>>> before I
>>>>> > upgraded R from 3.1.1. to 3.2.5, QGIS from 2.12.3 to 2.14.1 and
>>>>> RStudio to
>>>>> > version 0.99.467.
>>>>> >
>>>>> > My details are below, thanks for the assistance:
>>>>> >
>>>>> > R version 3.2.5 (2016-04-14) -- "Very, Very Secure Dishes"
>>>>> > Copyright (C) 2016 The R Foundation for Statistical Computing
>>>>> > Platform: x86_64-w64-mingw32/x64 (64-bit)
>>>>> >
>>>>> > R is free software and comes with ABSOLUTELY NO WARRANTY.
>>>>> > You are welcome to redistribute it under certain conditions.
>>>>> > Type 'license()' or 'licence()' for distribution details.
>>>>> >
>>>>> > R is a collaborative project with many contributors.
>>>>> > Type 'contributors()' for more information and
>>>>> > 'citation()' on how to cite R or R packages in publications.
>>>>> >
>>>>> > Type 'demo()' for some demos, 'help()' for on-line help, or
>>>>> > 'help.start()' for an HTML browser interface to help.
>>>>> > Type 'q()' to quit R.
>>>>> >
>>>>> >> require(MODIS)
>>>>> > Loading required package: MODIS
>>>>> > Loading required package: raster
>>>>> > Loading required package: sp
>>>>> > MODIS_manual:
>>>>> >
>>>>> https://ivfl-rio.boku.ac.at/owncloud/public.php?service=files&t=660dc830afb091237cc40b3dea2fdf6b
>>>>> >
>>>>> > Attaching package: ‘MODIS’
>>>>> >
>>>>> > The following object is masked from ‘package:base’:
>>>>> >
>>>>> >     file.size
>>>>> >
>>>>> >> MODISoptions()
>>>>> > All suggested packages are installed
>>>>> > Detecting available write drivers!
>>>>> > Found: 64 candidate drivers, detecting file extensions...
>>>>> > 0 usable drivers detected!
>>>>> >
>>>>> > STORAGE:
>>>>> > _______________
>>>>> > localArcPath : C:/Users/Hakim/Documents/MODIS_ARC/
>>>>> > outDirPath   : C:/Users/Hakim/Documents/MODIS_ARC/PROCESSED/
>>>>> >
>>>>> >
>>>>> > DOWNLOAD:
>>>>> > _______________
>>>>> > MODISserverOrder : LPDAAC, LAADS
>>>>> > dlmethod         : auto
>>>>> > stubbornness     : 5
>>>>> >
>>>>> >
>>>>> > PROCESSING:
>>>>> > _______________
>>>>> > GDAL           : GDAL 2.0.2, released 2016/01/26
>>>>> > MRT            : Version 4.1 (March 2011)
>>>>> > pixelSize      : asIn
>>>>> > outProj        : GEOGRAPHIC
>>>>> > resamplingType : NN
>>>>> > dataFormat     : GTiff
>>>>> >
>>>>> >
>>>>> > DEPENDENCIES:
>>>>> > _______________
>>>>> >
>>>>> >> dates <- as.POSIXct( as.Date(c("01/01/2010","01/05/2016"),format =
>>>>> > "%d/%m/%Y") )
>>>>> >> dates <- transDate(dates[1],dates[2])
>>>>> >> product <- "MOD13Q1"
>>>>> >> bands <- "010"
>>>>> >> h = c("21","22")
>>>>> >> v = c("07","08")
>>>>> > *> runGdal(product=product,begin=dates$beginDOY,end =
>>>>> dates$endDOY,tileH =
>>>>> > h,tileV = v, SDSstring = bands, outProj="4326")*
>>>>> > *Error in runGdal(product = product, begin = dates$beginDOY, end =
>>>>> > dates$endDOY,  : **in argument dataFormat='GTiff', format not
>>>>> supported by
>>>>> > GDAL type: 'gdalWriteDriver()' (column 'name') to list available
>>>>> inputs*
>>>>> >> sessionInfo()
>>>>> > R version 3.2.5 (2016-04-14)
>>>>> > Platform: x86_64-w64-mingw32/x64 (64-bit)
>>>>> > Running under: Windows 7 x64 (build 7601) Service Pack 1
>>>>> >
>>>>> > locale:
>>>>> > [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
>>>>> > States.1252
>>>>> > [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
>>>>> >
>>>>> > [5] LC_TIME=English_United States.1252
>>>>> >
>>>>> > attached base packages:
>>>>> > [1] stats     graphics  grDevices utils     datasets  methods   base
>>>>> >
>>>>> > other attached packages:
>>>>> > [1] MODIS_0.10-34 raster_2.5-2  sp_1.2-3
>>>>> >
>>>>> > loaded via a namespace (and not attached):
>>>>> > [1] tools_3.2.5     Rcpp_0.12.4     grid_3.2.5      lattice_0.20-33
>>>>> >
>>>>> >
>>>>> >
>>>>> > __________________________________________________
>>>>> >
>>>>> > Hakim Abdi | PhD Candidate
>>>>> > Center for Geobiosphere Science
>>>>> >
>>>>> > Department of Physical Geography and Ecosystem Science
>>>>> > Lund University, Sölvegatan 12, SE-223 62 Lund, Sweden
>>>>> >
>>>>> >       [[alternative HTML version deleted]]
>>>>> >
>>>>> > _______________________________________________
>>>>> > R-sig-Geo mailing list
>>>>> > R-sig-Geo at r-project.org
>>>>> > https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>>>>> >
>>>>>
>>>>>
>>>>
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>>>
>>>
>>
>

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