[R-sig-Geo] gbif error message in package dismo

[Mark van Kleunen]

Hello Eder,

Indeed, the update of the jsonlite package did the trick; now I can 
download all gbif occurrences. Thanks a lot for your help!

best wishes,
Mark

On 21/05/2015 13:52, Éder Comunello wrote:
> Hello, Mark!
>
> Could you update your packages and rerun the test? My guess is an 
> issue with {jsonlite} version when it tries binds the searches 
> (nrecs=300)...
>
> update.packages(ask=T)
>
> ​
> ================================================
> Éder Comunello
> PhD Student in Agricultural Systems Engineering (USP/Esalq)
> Brazilian Agricultural Research Corporation (Embrapa)
> Dourados, MS, Brazil [22 16.5'S, 54 49.0'W]
>
>
> 2015-05-21 2:48 GMT-04:00 Mark van Kleunen 
> <mark.vankleunen at uni-konstanz.de 
> <mailto:mark.vankleunen at uni-konstanz.de>>:
>
>     Dear Eder,
>
>     The output of sessionInfo() is:
>
>     > sessionInfo()
>     R version 3.1.3 (2015-03-09)
>     Platform: x86_64-w64-mingw32/x64 (64-bit)
>     Running under: Windows 7 x64 (build 7601) Service Pack 1
>
>     locale:
>     [1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United
>     Kingdom.1252
>     [3] LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C
>     [5] LC_TIME=English_United Kingdom.1252
>
>     attached base packages:
>     [1] stats     graphics  grDevices utils     datasets methods   base
>
>     other attached packages:
>      [1] rworldmap_1.3-1  mapproj_1.2-2 maps_2.3-9      
>     geosphere_1.3-11 rgdal_0.9-1 rgbif_0.8.0
>      [7] shapefiles_0.7   foreign_0.8-61   XML_3.98-1.1
>     dismo_1.0-12     rgeos_0.3-6      raster_2.3-0
>     [13] maptools_0.8-30  sp_1.0-15
>
>     loaded via a namespace (and not attached):
>      [1] chron_2.3-45     colorspace_1.2-4 data.table_1.9.4
>     digest_0.6.4     fields_7.1 ggplot2_1.0.0
>      [7] grid_3.1.3       gtable_0.1.2     httr_0.5 jsonlite_0.9.12 
>     lattice_0.20-29  magrittr_1.5
>     [13] MASS_7.3-35      munsell_0.4.2    plyr_1.8.1 proto_0.3-10    
>     Rcpp_0.11.3      reshape2_1.4
>     [19] scales_0.2.4     spam_1.0-1       stringr_0.6.2
>     tools_3.1.3      whisker_0.3-2
>     >
>
>     Interestingly, when I use "end=30)", then the error message does
>     not appear.
>     So,
>     gb   <- gbif('Batrachoseps', 'luciae', start=1, end=30)
>     > traceback()
>     No traceback available
>
>     When I set end=1000, then I get again the error message:
>     > gb   <- gbif('Batrachoseps', 'luciae', start=1, end=1000)
>     0-300-600-900-1000 records
>     Error in (function (classes, fdef, mtable)  :
>       unable to find an inherited method for function ‘bind’ for
>     signature ‘"data.frame", "data.frame"’
>
>     Does this information provide any insight into what the problem
>     might be?
>
>     best,
>     Mark
>
>

-- 
Prof. Dr Mark van Kleunen
Ecology, Department of Biology
University of Konstanz
Universitätsstrasse 10
D 78457 Konstanz
Germany

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