[R-sig-Geo] gbif error message in package dismo

[Éder Comunello]

Hello, Mark!

Could you update your packages and rerun the test? My guess is an issue
with {jsonlite} version when it tries binds the searches (nrecs=300)...

update.packages(ask=T)

​
================================================
Éder Comunello
PhD Student in Agricultural Systems Engineering (USP/Esalq)
Brazilian Agricultural Research Corporation (Embrapa)
Dourados, MS, Brazil [22 16.5'S, 54 49.0'W]


2015-05-21 2:48 GMT-04:00 Mark van Kleunen <mark.vankleunen at uni-konstanz.de>
:

>  Dear Eder,
>
> The output of sessionInfo() is:
>
> > sessionInfo()
> R version 3.1.3 (2015-03-09)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> Running under: Windows 7 x64 (build 7601) Service Pack 1
>
> locale:
> [1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United
> Kingdom.1252
> [3] LC_MONETARY=English_United Kingdom.1252
> LC_NUMERIC=C
> [5] LC_TIME=English_United Kingdom.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
>  [1] rworldmap_1.3-1  mapproj_1.2-2    maps_2.3-9       geosphere_1.3-11
> rgdal_0.9-1      rgbif_0.8.0
>  [7] shapefiles_0.7   foreign_0.8-61   XML_3.98-1.1     dismo_1.0-12
> rgeos_0.3-6      raster_2.3-0
> [13] maptools_0.8-30  sp_1.0-15
>
> loaded via a namespace (and not attached):
>  [1] chron_2.3-45     colorspace_1.2-4 data.table_1.9.4 digest_0.6.4
> fields_7.1       ggplot2_1.0.0
>  [7] grid_3.1.3       gtable_0.1.2     httr_0.5         jsonlite_0.9.12
> lattice_0.20-29  magrittr_1.5
> [13] MASS_7.3-35      munsell_0.4.2    plyr_1.8.1       proto_0.3-10
> Rcpp_0.11.3      reshape2_1.4
> [19] scales_0.2.4     spam_1.0-1       stringr_0.6.2    tools_3.1.3
> whisker_0.3-2
> >
>
> Interestingly, when I use "end=30)", then the error message does not
> appear.
> So,
> gb   <- gbif('Batrachoseps', 'luciae', start=1, end=30)
> > traceback()
> No traceback available
>
> When I set end=1000, then I get again the error message:
> > gb   <- gbif('Batrachoseps', 'luciae', start=1, end=1000)
> 0-300-600-900-1000 records
> Error in (function (classes, fdef, mtable)  :
>   unable to find an inherited method for function ‘bind’ for signature
> ‘"data.frame", "data.frame"’
>
> Does this information provide any insight into what the problem might be?
>
> best,
> Mark
>
>
>

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