[R-sig-Geo] Zero Inflated Poisson

[Virgilio Gomez Rubio]

Sven,

In addition to what Edzer has pointed out, I have been trying to fit
some zero-inflated Binomial models recently, but I have found that
including spatial random effects may not be a good idea when the number
of zeros is large. 

In our case, we have 126 observations with only 17 non-zero
observations. We used package VGAM to fit zero-inflated models and
WinBUGS to fit models with random effects. In general, including random
effects is problematic and convergence was terrible in some cases. My
feeling is that the zero-inflated part of the model may clash with
random effects. 

If you have several observations per site this may change. We also
observed a better fit when we consider several observations per site (by
splitting the observations into 3 age groups).

I do not think that there is a way of fitting zero-inflated spatial
models in R (but I may be wrong). I asked Paulo Ribeiro some months ago
about whether geoR/geoRglm can handle that and the answer was no.

Hope this helps.

Virgilio

El mié, 11-03-2009 a las 16:21 +0100, Edzer Pebesma escribió:
> *I'm not sure if you're aware of the following publication:
> 
> *
> 
> *2005*: Mapping sea bird densities over the North Sea: spatially
> aggregated estimates and temporal changes
> <http://www.citeulike.org/article/3505281>
> Pebesma Edzer J. and Duin Richard N. M. and Burrough Peter A.
> /Environmetrics/
> 
> *The analysis done there is mostly reproduced by:
> *
> 
> *library(gstat)
> demo(fulmar) # Fulmaris glacialis
> *
> 
> *Another direction you might want to look at is package geoRglm.
> *
> 
> *Best regads,
> --
> Edzer
> *
> 
> 
> 
> Sven Adler wrote:
> > Dear all,
> > I want to model bird distribution at see. The data consists 10000
> > samples but 90% are zeros. I try first a gamm (mgcv)with quasipoisson
> > but it might bee problematic with so many zeros. I look for a (spatial)
> > model that can use Zero Inflated Poisson distribution or similar. Is
> > there any?
> >
> > Thank you
> > sincerely yours
> >
> > Sven
> >
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>