[R-sig-genetics] genlight to treemix conversion

[Daniel Fulop]

Dear all,

I’m wondering if someone has code for converting data from genlight to treemix format. If you do and wouldn’t mind sharing it I would be most grateful.

I think one could do as.matrix(genlight-object) and then sum the alleles for each population, but then I’m not sure how to deal with NAs.

Thanks!
Dan.
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