[R-sig-genetics] R & Arlequin (little OT?)

[Vojtěch Zeisek]

Hello,
I hope this is not too much off-topic for this list. I'm using Arlequin 3.5 
http://cmpg.unibe.ch/software/arlequin35/ (actually, Linux version of 
Arlecore) and I'd like to parse Arelquin's output through R as described in 
the manual, but I get error about missing function 
xmlTreeParse, so nothing is computed:

source("/home/vojta/bin/arlecore_linux/Rfunctions/rParsingSettings.r")
Error in library(XML, lib.loc = paste(substr(sourcePath, 0, nchar(sourcePath) 
-  : 
  no library trees found in 'lib.loc'
Error in library(XML, lib.loc = paste(substr(sourcePath, 0, nchar(sourcePath) 
-  : 
  no library trees found in 'lib.loc'
Error in parseArlequin(infile, outfiles, sourcePath) : 
  could not find function "xmlTreeParse"

So it seems the xmlTreeParse is missing. Or am I doing something very wrong? 
Does anyone have any experience with this? :-)
All the best,
Vojtěch

-- 
Vojtěch Zeisek

Komunita openSUSE GNU/Linuxu
Community of the openSUSE GNU/Linux

http://www.opensuse.org/
http://trapa.cz/
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