[R-sig-Fedora] rstan warning messages

[Patrick, Larry B [CSSM]]

Both RCurl and rstan seem to have installed now.

Did the following on my RHEL6 server:
     [root at ping ~]# export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/
     [root at ping ~]# /usr/bin/curl-config --libs
     -L/usr/lib64 -lcurl

Now the output from your previous commands look like:
      [root at ping ~]# pkg-config --list-all |grep libcurl
     libcurl                    libcurl - Library to transfer files with ftp, http, etc.
      [root at ping ~]# curl-config --libs
     -L/usr/lib64 -lcurl
      [root at ping ~]# rpm -V libcurl-devel libcurl
     prelink: /usr/lib64/libcurl.so.4.1.1: at least one of file's dependencies has changed since prelinking
     S.?......    /usr/lib64/libcurl.so.4.1.1

Attached are the long logs from RCurl and rstan.

Let me know if you spot something of concern. Hopefully I am good to go now.

Thanks for the assist,
Larry



-----Original Message-----
From: R-SIG-Fedora [mailto:r-sig-fedora-bounces at r-project.org] On Behalf Of Patrick, Larry B [CSSM]
Sent: Wednesday, February 03, 2016 9:06 AM
To: 'Tom Callaway' <tcallawa at redhat.com>; 'r-sig-fedora at r-project.org' <r-sig-fedora at r-project.org>
Subject: Re: [R-sig-Fedora] rstan warning messages

I used epel to install again. I removed the original installation that seemed from epel also.

     [root at ping /]# pkg-config --list-all |grep libcurl
      [root at ping /]#
That doesn't look good.
      [root at ping /]# curl-config --libs
     Package libcurl was not found in the pkg-config search path.
     Perhaps you should add the directory containing `libcurl.pc'
     to the PKG_CONFIG_PATH environment variable
     No package 'libcurl' found
Again not good.
      [root at ping /]# rpm -V libcurl-devel libcurl
     prelink: /usr/lib64/libcurl.so.4.1.1: at least one of file's dependencies has changed since prelinking
     S.?......    /usr/lib64/libcurl.so.4.1.1

Something definitely not looking good here.

Thanks,
Larry


-----Original Message-----
From: Tom Callaway [mailto:tcallawa at redhat.com] 
Sent: Wednesday, February 03, 2016 9:02 AM
To: Patrick, Larry B [CSSM] <longplay at iastate.edu>; 'r-sig-fedora at r-project.org' <r-sig-fedora at r-project.org>
Subject: Re: [R-sig-Fedora] rstan warning messages

On 02/03/2016 09:52 AM, Tom Callaway wrote:

> Are you trying to build R and components for i686 rather than x86_64?

Never mind. Your logs make it clear that you're building for x86_64.

Can you share the output of:

pkg-config --list-all |grep libcurl
curl-config --libs
rpm -V libcurl-devel libcurl

I'm honestly baffled as to why the configure script is failing to find libcurl.pc on your system:

  Package libcurl was not found in the pkg-config search path.

  Perhaps you should add the directory containing `libcurl.pc'

  to the PKG_CONFIG_PATH environment variable

  No package 'libcurl' found

Do you have any files installed into /usr/local/ ?

~tom

==
Red Hat

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