[root@ping ~]# R R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: x86_64-redhat-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. [Previously saved workspace restored] > install.packages('rstan', dependencies=TRUE, repos='http://cran.r-project.org/') Installing package into ‘/usr/lib64/R/library’ (as ‘lib’ is unspecified) trying URL 'http://cran.r-project.org/src/contrib/rstan_2.9.0.tar.gz' Content type 'application/x-gzip' length 1092482 bytes (1.0 MB) ================================================== downloaded 1.0 MB * installing *source* package ‘rstan’ ... ** package ‘rstan’ successfully unpacked and MD5 sums checked ** libs g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c chains.cpp -o chains.o g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c init.cpp -o init.o g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__ast_def.cpp -o lang__ast_def.o g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__bare_type_grammar_inst.cpp -o lang__grammars__bare_type_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_inst.cpp:1, from lang__grammars__bare_type_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_inst.cpp:1, from lang__grammars__bare_type_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_inst.cpp:1, from lang__grammars__bare_type_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__expression07_grammar_inst.cpp -o lang__grammars__expression07_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_def.hpp:8, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_inst.cpp:1, from lang__grammars__expression07_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_def.hpp:8, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_inst.cpp:1, from lang__grammars__expression07_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_def.hpp:8, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_inst.cpp:1, from lang__grammars__expression07_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__expression_grammar_inst.cpp -o lang__grammars__expression_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_def.hpp:15, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_inst.cpp:1, from lang__grammars__expression_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_def.hpp:15, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_inst.cpp:1, from lang__grammars__expression_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_def.hpp:15, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_inst.cpp:1, from lang__grammars__expression_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__functions_grammar_inst.cpp -o lang__grammars__functions_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_inst.cpp:1, from lang__grammars__functions_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_inst.cpp:1, from lang__grammars__functions_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_inst.cpp:1, from lang__grammars__functions_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__indexes_grammar_inst.cpp -o lang__grammars__indexes_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_inst.cpp:1, from lang__grammars__indexes_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_inst.cpp:1, from lang__grammars__indexes_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_inst.cpp:1, from lang__grammars__indexes_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__program_grammar_inst.cpp -o lang__grammars__program_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_def.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_inst.cpp:1, from lang__grammars__program_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_def.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_inst.cpp:1, from lang__grammars__program_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_def.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_inst.cpp:1, from lang__grammars__program_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__statement_2_grammar_inst.cpp -o lang__grammars__statement_2_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_def.hpp:15, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_inst.cpp:1, from lang__grammars__statement_2_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_def.hpp:15, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_inst.cpp:1, from lang__grammars__statement_2_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_def.hpp:15, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_inst.cpp:1, from lang__grammars__statement_2_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__statement_grammar_inst.cpp -o lang__grammars__statement_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_inst.cpp:1, from lang__grammars__statement_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_inst.cpp:1, from lang__grammars__statement_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_inst.cpp:1, from lang__grammars__statement_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__term_grammar_inst.cpp -o lang__grammars__term_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/term_grammar_def.hpp:17, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/term_grammar_inst.cpp:1, from lang__grammars__term_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/term_grammar_def.hpp:17, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/term_grammar_inst.cpp:1, from lang__grammars__term_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/term_grammar_def.hpp:17, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/term_grammar_inst.cpp:1, from lang__grammars__term_grammar_inst.cpp:18: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__var_deccls_grammar_inst.cpp -o lang__grammars__var_deccls_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/var_decls_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/var_decls_grammar_inst.cpp:1, from lang__grammars__var_deccls_grammar_inst.cpp:19: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/var_decls_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/var_decls_grammar_inst.cpp:1, from lang__grammars__var_deccls_grammar_inst.cpp:19: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/var_decls_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/var_decls_grammar_inst.cpp:1, from lang__grammars__var_deccls_grammar_inst.cpp:19: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lang__grammars__whitespace_grammar_inst.cpp -o lang__grammars__whitespace_grammar_inst.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/whitespace_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/whitespace_grammar_inst.cpp:1, from lang__grammars__whitespace_grammar_inst.cpp:19: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/whitespace_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/whitespace_grammar_inst.cpp:1, from lang__grammars__whitespace_grammar_inst.cpp:19: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/whitespace_grammar_def.hpp:4, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/whitespace_grammar_inst.cpp:1, from lang__grammars__whitespace_grammar_inst.cpp:19: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c misc.cpp -o misc.o g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c sparse_extractors.cpp -o sparse_extractors.o In file included from /usr/lib64/R/library/BH/include/boost/multi_array/base.hpp:28:0, from /usr/lib64/R/library/BH/include/boost/multi_array.hpp:21, from /usr/lib64/R/library/BH/include/boost/numeric/odeint/util/multi_array_adaption.hpp:29, from /usr/lib64/R/library/BH/include/boost/numeric/odeint.hpp:61, from /usr/lib64/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode.hpp:12, from /usr/lib64/R/library/StanHeaders/include/stan/math.hpp:65, from /usr/lib64/R/library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:4, from sparse_extractors.cpp:2: /usr/lib64/R/library/BH/include/boost/multi_array/concept_checks.hpp: In static member function ‘static void boost::multi_array_concepts::detail::idgen_helper::call(Array&, const IdxGen&, Call_Type)’: /usr/lib64/R/library/BH/include/boost/multi_array/concept_checks.hpp:42:43: warning: typedef ‘index_range’ locally defined but not used [-Wunused-local-typedefs] typedef typename Array::index_range index_range; ^ /usr/lib64/R/library/BH/include/boost/multi_array/concept_checks.hpp:43:37: warning: typedef ‘index’ locally defined but not used [-Wunused-local-typedefs] typedef typename Array::index index; ^ /usr/lib64/R/library/BH/include/boost/multi_array/concept_checks.hpp: In static member function ‘static void boost::multi_array_concepts::detail::idgen_helper<0ul>::call(Array&, const IdxGen&, Call_Type)’: /usr/lib64/R/library/BH/include/boost/multi_array/concept_checks.hpp:53:43: warning: typedef ‘index_range’ locally defined but not used [-Wunused-local-typedefs] typedef typename Array::index_range index_range; ^ /usr/lib64/R/library/BH/include/boost/multi_array/concept_checks.hpp:54:37: warning: typedef ‘index’ locally defined but not used [-Wunused-local-typedefs] typedef typename Array::index index; ^ In file included from /usr/lib64/R/library/StanHeaders/include/stan/math.hpp:80:0, from /usr/lib64/R/library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:4, from sparse_extractors.cpp:2: /usr/lib64/R/library/StanHeaders/include/stan/math/prim/mat/err/check_positive_ordered.hpp: In function ‘bool stan::math::check_positive_ordered(const char*, const char*, const Eigen::Matrix&)’: /usr/lib64/R/library/StanHeaders/include/stan/math/prim/mat/err/check_positive_ordered.hpp:39:67: warning: typedef ‘size_type’ locally defined but not used [-Wunused-local-typedefs] typedef typename index_type >::type size_type; ^ g++ -m64 -I/usr/include/R -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -I"/usr/lib64/R/library/RcppEigen/include" -I"/usr/lib64/R/library/BH/include" -I"/usr/lib64/R/library/StanHeaders/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c stanc.cpp -o stanc.o In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/parser.hpp:9, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/compiler.hpp:6, from stanc.cpp:22: /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/parser.hpp:9, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/compiler.hpp:6, from stanc.cpp:22: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24, from /usr/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22, from /usr/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15, from /usr/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30, from /usr/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/parser.hpp:9, from /usr/lib64/R/library/StanHeaders/include/src/stan/lang/compiler.hpp:6, from stanc.cpp:22: /usr/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -m64 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o rstan.so chains.o init.o lang__ast_def.o lang__grammars__bare_type_grammar_inst.o lang__grammars__expression07_grammar_inst.o lang__grammars__expression_grammar_inst.o lang__grammars__functions_grammar_inst.o lang__grammars__indexes_grammar_inst.o lang__grammars__program_grammar_inst.o lang__grammars__statement_2_grammar_inst.o lang__grammars__statement_grammar_inst.o lang__grammars__term_grammar_inst.o lang__grammars__var_deccls_grammar_inst.o lang__grammars__whitespace_grammar_inst.o misc.o sparse_extractors.o stanc.o -L/usr/lib64/R/lib -lR installing to /usr/lib64/R/library/rstan/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package ‘rstan’ finding HTML links ... done expose_stan_functions html extract_sparse_parts html lookup html makeconf_path html monitor html plotting-functions html Rd warning: /tmp/RtmpbtAcpJ/R.INSTALL682b5ec7422f/rstan/man/plotting-functions.Rd:19: missing file link ‘stan_ac’ print.stanfit html read_rdump html rstan-internal html rstan html rstan.package.skeleton html rstan_options html set_cppo html sflist2stanfit html stan html stan_csv html stan_demo html stan_model html stan_plot html stan_plot_diagnostics html Rd warning: /tmp/RtmpbtAcpJ/R.INSTALL682b5ec7422f/rstan/man/stan_plot_diagnostics.Rd:36: missing file link ‘stat_bin’ stan_plot_options html stan_rdump html stan_version html stanc html stanfit-class html stanfit-method-extract html stanfit-method-logprob html stanfit-method-pairs html stanfit-method-plot html stanfit-method-traceplot html stanfit2array-method html stanmodel-class html stanmodel-method-optimizing html stanmodel-method-sampling html stanmodel-method-vb html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rstan) Making 'packages.html' ... done The downloaded source packages are in ‘/tmp/Rtmpu4a96L/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done >