[R-sig-Epi] R-sig-Epi Digest, Vol 49, Issue 4

[Ethan Chang]

I think the package in Genetics would be the best choice for your project, but not the Epi.
And Bioconductor' packages could also be a better candidate. 




At 2011-01-27 19:00:02，r-sig-epi-request at r-project.org wrote:

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>   1. Re: LD between diallelic and multiallelic loci (Neil Shephard)
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>
>----------------------------------------------------------------------
>
>Message: 1
>Date: Wed, 26 Jan 2011 11:33:24 +0000
>From: Neil Shephard <nshephard at gmail.com>
>To: r-sig-epi at r-project.org
>Subject: Re: [R-sig-Epi] LD between diallelic and multiallelic loci
>Message-ID:
>	<AANLkTim77omxm_64-vDnyOzUAB_+cYpt5+EHN5w1zDjg at mail.gmail.com>
>Content-Type: text/plain; charset=windows-1252
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>On Wed, Jan 26, 2011  ?<kudryavtseva_kathrin at ngs.ru> wrote:
>> To: r-sig-epi at r-project.org
>> Subject: [R-sig-Epi] LD between diallelic and multiallelic loci
>> Message-ID: <4D3ECC88.5060401 at ngs.ru>
>> Content-Type: text/plain
>>
>> Dear all,
>>
>> I am planning to analyse linkage between two loci( first - diallelic,
>> second - multiallelic (HLA-DRB1)). What function should i use?
>> Usually I use LD(data) function but it doesn't work if number of locus'
>> alleles more then 2.
>
>I don't know which package the LD() function comes from, but you could
>try some of the packages listed at
>http://cran.r-project.org/web/views/Genetics.html
>
>Neil
>
>-- 
>?Truth in science can be defined as the working hypothesis best suited
>to open the way to the next better one.? - Konrad Lorenz
>
>Email - nshephard at gmail.com
>Website - http://kimura.no-ip.org/
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>End of R-sig-Epi Digest, Vol 49, Issue 4
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