[R-sig-dyn-mod] stiff ode - accuracy default values

Radovan Omorjan omorr at uns.ac.rs
Fri Apr 29 15:58:56 CEST 2016


Dear Thomas,

Thank you very much for your prompt response.

I am sorry for this inconvenience, and I will do as you said regarding 
the message and the code.
I will resend it again this moment.

Best Regards,
Radovan

On 04/29/2016 02:51 PM, Thomas Petzoldt wrote:
> Dear Radovan,
>
> attachments are not allowed in this mailing list, so please re-send 
> your question again, text only with reproducible code.
>
> See:
>
> https://www.r-project.org/posting-guide.html
>
> Thomas Petzoldt
> (mailing list moderator)
>
>
> On 29.04.2016 14:39, Radovan Omorjan wrote:
>> Hello,
>>
>> Here is one of my test examples for stiff ode solvers (attached). I
>> tried many lsoda based solvers in different software and they usually
>> can solve this problem with their default parameter values (accuracy
>> etc.). By using ode() from deSolve, it seems that I have to reduce the
>> values of atol and rtol in order to get the expected profiles. There is
>> no method using the default accuracy values I tried which will give me
>> the profile I expect.
>>
>> The problem with these equations become problematic when times riches
>> around 16.33. After that time the value of B should be constant and for
>> S should be zero.
>>
>> I just wanted to send this example to the mailing list and hope there
>> might be any comment about it. In the first place, I hope that the
>> authors of deSolve might consider this example regarding the default
>> values of atol and rtol.
>>
>> Best Regards,
>> Radovan
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