[R-sig-Debian] Can't install package tidyverse on Debian 10 stable
Dirk Eddelbuettel
edd @end|ng |rom deb|@n@org
Sat Jul 24 02:29:08 CEST 2021
Luben,
Adding to what Tyler kindly said:
On 23 July 2021 at 19:35, Tyler Smith wrote:
| libcurl and libcurl4-openssl-dev are Debian packages, not R packages. You can install them from the command line (not R):
|
| sudo apt-get install libcurl4-openssl-dev
|
| Or use your package manager.
Depending on exactly _which_ Debian (or Ubuntu) flavour you use you also can
get *ALL* of the tidyverse *IN ONE SHOT* as binaries.
I have several posts (and demos !!) on that below
http://dirk.eddelbuettel.com/blog/code/r4/
so take a look and read up, and please come back here with questions. It is
a difficult step to get all of tidyverse (or, say, rstan) but we *do* have in
binaries. This is very much worth learning about methinks.
Cheers, Dirk
| Best,
|
| Tyler
|
| --
| plantarum.ca
|
| On Fri, Jul 23, 2021, at 7:31 PM, Luben Dimov wrote:
| > Hello,
| >
| > I am able to install the tidyverse package on a computer with Windows
| > OS, but not on Debian 10 stable. (I am new to R and RStudio and
| > somewhat new to Debian.)
| >
| > I have the latest R and RStudio. While I easily install the packages
| > for our workshop, the tidyverse is not getting installed.
| >
| >
| >
| > The more detailed output is at the very end of this message, but in
| > short, the problem seems to start while installing the package curl,
| > which is part of tidyverse:
| >
| > ----------------------
| >
| > * installing *source* package ‘curl’ ...
| >
| > ** package ‘curl’ successfully unpacked and MD5 sums checked
| >
| > ** using staged installation
| >
| > Package libcurl was not found in the pkg-config search path.
| >
| > Perhaps you should add the directory containing `libcurl.pc'
| >
| > to the PKG_CONFIG_PATH environment variable
| >
| > No package 'libcurl' found
| >
| > Package libcurl was not found in the pkg-config search path.
| >
| > Perhaps you should add the directory containing `libcurl.pc'
| >
| > to the PKG_CONFIG_PATH environment variable
| >
| > No package 'libcurl' found
| >
| > Using PKG_CFLAGS=
| >
| > Using PKG_LIBS=-lcurl
| >
| > ----------------------
| >
| >
| >
| > When I try to install libcurl, I get:
| >
| > ----------------------------
| >
| > install.packages("libcurl")
| >
| > Installing package into ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1’
| >
| > (as ‘lib’ is unspecified)
| >
| > Warning in install.packages :
| >
| > package ‘libcurl’ is not available for this version of R
| >
| >
| >
| > A version of this package for your version of R might be available
| > elsewhere,
| >
| > see the ideas at
| >
| > https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
| >
| > ------------------------------
| >
| >
| >
| > Another suggestions is to install libcurl4-openssl-dev, but when I try
| > to, I get:
| >
| > -----------------------------
| >
| > > install.packages("libcurl4-openssl-dev")
| >
| > Installing package into ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1’
| >
| > (as ‘lib’ is unspecified)
| >
| > Warning in install.packages :
| >
| > package ‘libcurl4-openssl-dev’ is not available for this version of R
| >
| >
| >
| > A version of this package for your version of R might be available
| > elsewhere,
| >
| > see the ideas at
| >
| > https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
| >
| > ------------------------------
| >
| >
| >
| > Here is my session info:
| >
| > ---------------------------------------
| >
| > > sessionInfo() R version 4.1.0 (2021-05-18) Platform: x86_64-pc-linux-
| > gnu (64-bit) Running under: Debian GNU/Linux 10 (buster) Matrix
| > products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
| > LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0 locale: [1]
| > LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
| > LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8
| > LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C
| > LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached
| > base packages: [1] stats graphics grDevices utils datasets methods base
| > loaded via a namespace (and not attached): [1] compiler_4.1.0
| > tools_4.1.0
| >
| > ------------------------------
| >
| >
| >
| > And below is the full output with all the errors when trying to
| > tidyverse. I tried installing it on Debian 11 Testing, but no luck
| > there either, although the errors were different.
| > Thank you in advance for your help.
| >
| > Luben
| >
| > --------------------------------------
| >
| > > install.packages("tidyverse")
| >
| > Installing package into ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1’
| >
| > (as ‘lib’ is unspecified)
| >
| > also installing the dependencies ‘gargle’, ‘curl’, ‘ids’, ‘openssl’,
| > ‘googledrive’, ‘googlesheets4’, ‘httr’, ‘rvest’, ‘xml2’
| >
| >
| >
| > trying URL '
| > https://cloud.r-project.org/src/contrib/gargle_1.2.0.tar.gz'
| >
| > Content type 'application/x-gzip' length 313418 bytes (306 KB)
| >
| > ==================================================
| >
| > downloaded 306 KB
| >
| >
| >
| > trying URL 'https://cloud.r-project.org/src/contrib/curl_4.3.2.tar.gz'
| >
| > Content type 'application/x-gzip' length 793345 bytes (774 KB)
| >
| > ==================================================
| >
| > downloaded 774 KB
| >
| >
| >
| > trying URL 'https://cloud.r-project.org/src/contrib/ids_1.0.1.tar.gz'
| >
| > Content type 'application/x-gzip' length 91213 bytes (89 KB)
| >
| > ==================================================
| >
| > downloaded 89 KB
| >
| >
| >
| > trying URL '
| > https://cloud.r-project.org/src/contrib/openssl_1.4.4.tar.gz'
| >
| > Content type 'application/x-gzip' length 1311285 bytes (1.3 MB)
| >
| > ==================================================
| >
| > downloaded 1.3 MB
| >
| >
| >
| > trying URL '
| > https://cloud.r-project.org/src/contrib/googledrive_2.0.0.tar.gz'
| >
| > Content type 'application/x-gzip' length 1593656 bytes (1.5 MB)
| >
| > ==================================================
| >
| > downloaded 1.5 MB
| >
| >
| >
| > trying URL '
| > https://cloud.r-project.org/src/contrib/googlesheets4_0.3.0.tar.gz'
| >
| > Content type 'application/x-gzip' length 435126 bytes (424 KB)
| >
| > ==================================================
| >
| > downloaded 424 KB
| >
| >
| >
| > trying URL 'https://cloud.r-project.org/src/contrib/httr_1.4.2.tar.gz'
| >
| > Content type 'application/x-gzip' length 159950 bytes (156 KB)
| >
| > ==================================================
| >
| > downloaded 156 KB
| >
| >
| >
| > trying URL 'https://cloud.r-project.org/src/contrib/rvest_1.0.0.tar.gz'
| >
| > Content type 'application/x-gzip' length 94134 bytes (91 KB)
| >
| > ==================================================
| >
| > downloaded 91 KB
| >
| >
| >
| > trying URL 'https://cloud.r-project.org/src/contrib/xml2_1.3.2.tar.gz'
| >
| > Content type 'application/x-gzip' length 271876 bytes (265 KB)
| >
| > ==================================================
| >
| > downloaded 265 KB
| >
| >
| >
| > trying URL '
| > https://cloud.r-project.org/src/contrib/tidyverse_1.3.1.tar.gz'
| >
| > Content type 'application/x-gzip' length 702779 bytes (686 KB)
| >
| > ==================================================
| >
| > downloaded 686 KB
| >
| >
| >
| > * installing *source* package ‘curl’ ...
| >
| > ** package ‘curl’ successfully unpacked and MD5 sums checked
| >
| > ** using staged installation
| >
| > Package libcurl was not found in the pkg-config search path.
| >
| > Perhaps you should add the directory containing `libcurl.pc'
| >
| > to the PKG_CONFIG_PATH environment variable
| >
| > No package 'libcurl' found
| >
| > Package libcurl was not found in the pkg-config search path.
| >
| > Perhaps you should add the directory containing `libcurl.pc'
| >
| > to the PKG_CONFIG_PATH environment variable
| >
| > No package 'libcurl' found
| >
| > Using PKG_CFLAGS=
| >
| > Using PKG_LIBS=-lcurl
| >
| > ------------------------- ANTICONF ERROR ---------------------------
| >
| > Configuration failed because libcurl was not found. Try installing:
| >
| > * deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)
| >
| > * rpm: libcurl-devel (Fedora, CentOS, RHEL)
| >
| > * csw: libcurl_dev (Solaris)
| >
| > If libcurl is already installed, check that 'pkg-config' is in your
| >
| > PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config
| >
| > is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
| >
| > R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
| >
| > --------------------------------------------------------------------
| >
| > ERROR: configuration failed for package ‘curl’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/curl’
| >
| > Warning in install.packages :
| >
| > installation of package ‘curl’ had non-zero exit status
| >
| > * installing *source* package ‘openssl’ ...
| >
| > ** package ‘openssl’ successfully unpacked and MD5 sums checked
| >
| > ** using staged installation
| >
| > Using PKG_CFLAGS=
| >
| > --------------------------- [ANTICONF] --------------------------------
| >
| > Configuration failed because openssl was not found. Try installing:
| >
| > * deb: libssl-dev (Debian, Ubuntu, etc)
| >
| > * rpm: openssl-devel (Fedora, CentOS, RHEL)
| >
| > * csw: libssl_dev (Solaris)
| >
| > * brew: openssl using 1.1 (Mac OSX)
| >
| > If openssl is already installed, check that 'pkg-config' is in your
| >
| > PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config
| >
| > is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
| >
| > R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
| >
| > -------------------------- [ERROR MESSAGE] ---------------------------
| >
| > tools/version.c:1:10: fatal error: openssl/opensslv.h: No such file or
| > directory
| >
| > #include <openssl/opensslv.h>
| >
| > ^~~~~~~~~~~~~~~~~~~~
| >
| > compilation terminated.
| >
| > --------------------------------------------------------------------
| >
| > ERROR: configuration failed for package ‘openssl’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/openssl’
| >
| > Warning in install.packages :
| >
| > installation of package ‘openssl’ had non-zero exit status
| >
| > * installing *source* package ‘xml2’ ...
| >
| > ** package ‘xml2’ successfully unpacked and MD5 sums checked
| >
| > ** using staged installation
| >
| > Package libxml-2.0 was not found in the pkg-config search path.
| >
| > Perhaps you should add the directory containing `libxml-2.0.pc'
| >
| > to the PKG_CONFIG_PATH environment variable
| >
| > No package 'libxml-2.0' found
| >
| > Package libxml-2.0 was not found in the pkg-config search path.
| >
| > Perhaps you should add the directory containing `libxml-2.0.pc'
| >
| > to the PKG_CONFIG_PATH environment variable
| >
| > No package 'libxml-2.0' found
| >
| > Using PKG_CFLAGS=
| >
| > Using PKG_LIBS=-lxml2
| >
| > ------------------------- ANTICONF ERROR ---------------------------
| >
| > Configuration failed because libxml-2.0 was not found. Try installing:
| >
| > * deb: libxml2-dev (Debian, Ubuntu, etc)
| >
| > * rpm: libxml2-devel (Fedora, CentOS, RHEL)
| >
| > * csw: libxml2_dev (Solaris)
| >
| > If libxml-2.0 is already installed, check that 'pkg-config' is in your
| >
| > PATH and PKG_CONFIG_PATH contains a libxml-2.0.pc file. If pkg-config
| >
| > is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
| >
| > R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
| >
| > --------------------------------------------------------------------
| >
| > ERROR: configuration failed for package ‘xml2’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/xml2’
| >
| > Warning in install.packages :
| >
| > installation of package ‘xml2’ had non-zero exit status
| >
| > ERROR: dependency ‘openssl’ is not available for package ‘ids’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/ids’
| >
| > Warning in install.packages :
| >
| > installation of package ‘ids’ had non-zero exit status
| >
| > ERROR: dependencies ‘curl’, ‘openssl’ are not available for package
| > ‘httr’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/httr’
| >
| > Warning in install.packages :
| >
| > installation of package ‘httr’ had non-zero exit status
| >
| > ERROR: dependency ‘httr’ is not available for package ‘gargle’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/gargle’
| >
| > Warning in install.packages :
| >
| > installation of package ‘gargle’ had non-zero exit status
| >
| > ERROR: dependencies ‘httr’, ‘xml2’ are not available for package
| > ‘rvest’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/rvest’
| >
| > Warning in install.packages :
| >
| > installation of package ‘rvest’ had non-zero exit status
| >
| > ERROR: dependencies ‘gargle’, ‘httr’ are not available for package
| > ‘googledrive’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/googledrive’
| >
| > Warning in install.packages :
| >
| > installation of package ‘googledrive’ had non-zero exit status
| >
| > ERROR: dependencies ‘curl’, ‘gargle’, ‘googledrive’, ‘httr’, ‘ids’ are
| > not available for package ‘googlesheets4’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-
| > library/4.1/googlesheets4’
| >
| > Warning in install.packages :
| >
| > installation of package ‘googlesheets4’ had non-zero exit status
| >
| > ERROR: dependencies ‘googledrive’, ‘googlesheets4’, ‘httr’, ‘rvest’,
| > ‘xml2’ are not available for package ‘tidyverse’
| >
| > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/tidyverse’
| >
| > Warning in install.packages :
| >
| > installation of package ‘tidyverse’ had non-zero exit status
| >
| >
| >
| > The downloaded source packages are in
| >
| > ‘/tmp/RtmpF0FDpx/downloaded_packages’
| >
| > > library(tidyverse)
| >
| > Error in library(tidyverse) : there is no package called ‘tidyverse’
| >
| > _______________________________________________
| > R-SIG-Debian mailing list
| > R-SIG-Debian using r-project.org
| > https://stat.ethz.ch/mailman/listinfo/r-sig-debian
| >
|
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