[R-sig-Debian] lapack routines cannot be loaded

[G See]

Thank you for your response.  Unfortunately, I don't think I know
enough about linux to understand. :-(

Are you asking why I did not build from source?
Isn't adding "deb http://cran.us.r-project.org/bin/linux/ubuntu
precise/" and running "sudo apt-get upgrade" the same as downloading
from CRAN and installing it?

-Garrett

On Mon, Oct 29, 2012 at 8:33 AM, d.michon <d.michon at laposte.net> wrote:
> I think your problem comes if are under a Debian flavor (or an other linux
> distr) and then you are upgrading with some repository wich aren't in a
> Debian source (ubuntu).
>
> you had have first to upgrad, update, and then to put your new line.
>
> But why didn't you download Cran sources and then intall its ?
>
> Didier Michon
>
>
>
>
>
> Le 29/10/2012 09:45, G See a écrit :
>>
>> I installed R in (what I believe is) the standard way by adding the
>>
>> following line to /etc/apt/sources.list
>>
>>      deb http://cran.us.r-project.org/bin/linux/ubuntu precise/
>>
>> All was well, until I recently upgraded from 2.15.1 to 2.15.2 by running
>>
>>      sudo apt-get update
>>      sudo apt-get upgrade
>>
>> Now, when I try to do simple things, I get an error. e.g.
>>
>>      R> PP.test(rnorm(1000))
>>      Error in chol2inv(Qr$qr[p1, p1, drop = FALSE]) :
>>        lapack routines cannot be loaded
>>      In addition: Warning message:
>>      In chol2inv(Qr$qr[p1, p1, drop = FALSE]) :
>>        unable to load shared object '/usr/lib/R/modules//lapack.so':
>>        /usr/lib/R/modules//lapack.so: undefined symbol: dpstrf_
>>
>> I'm pretty sure I've never tried to build R from sources on this box.
>> Does anyone have any advice for how I can remedy this error?
>>
>> Thanks,
>> Garrett
>>
>> P.S.
>> R> sessionInfo()
>> R version 2.15.2 (2012-10-26)
>> Platform: x86_64-pc-linux-gnu (64-bit)
>>
>> locale:
>>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>>   [7] LC_PAPER=C                 LC_NAME=C
>>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> R> unlist(R.Version())
>>                         platform                            arch
>>            "x86_64-pc-linux-gnu"                        "x86_64"
>>                               os                          system
>>                      "linux-gnu"             "x86_64, linux-gnu"
>>                           status                           major
>>                               ""                             "2"
>>                            minor                            year
>>                           "15.2"                          "2012"
>>                            month                             day
>>                             "10"                            "26"
>>                          svn rev                        language
>>                          "61015"                             "R"
>>                   version.string                        nickname
>> "R version 2.15.2 (2012-10-26)"                "Trick or Treat"
>>
>> _______________________________________________
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>> R-SIG-Debian at r-project.org
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>>
>
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