[R-sig-Debian] lapack routines cannot be loaded

[d.michon]

I think your problem comes if are under a Debian flavor (or an other 
linux distr) and then you are upgrading with some repository wich aren't 
in a Debian source (ubuntu).

you had have first to upgrad, update, and then to put your new line.

But why didn't you download Cran sources and then intall its ?

Didier Michon





Le 29/10/2012 09:45, G See a écrit :
> I installed R in (what I believe is) the standard way by adding the
> following line to /etc/apt/sources.list
>
>      deb http://cran.us.r-project.org/bin/linux/ubuntu precise/
>
> All was well, until I recently upgraded from 2.15.1 to 2.15.2 by running
>
>      sudo apt-get update
>      sudo apt-get upgrade
>
> Now, when I try to do simple things, I get an error. e.g.
>
>      R> PP.test(rnorm(1000))
>      Error in chol2inv(Qr$qr[p1, p1, drop = FALSE]) :
>        lapack routines cannot be loaded
>      In addition: Warning message:
>      In chol2inv(Qr$qr[p1, p1, drop = FALSE]) :
>        unable to load shared object '/usr/lib/R/modules//lapack.so':
>        /usr/lib/R/modules//lapack.so: undefined symbol: dpstrf_
>
> I'm pretty sure I've never tried to build R from sources on this box.
> Does anyone have any advice for how I can remedy this error?
>
> Thanks,
> Garrett
>
> P.S.
> R> sessionInfo()
> R version 2.15.2 (2012-10-26)
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> locale:
>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>   [7] LC_PAPER=C                 LC_NAME=C
>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> R> unlist(R.Version())
>                         platform                            arch
>            "x86_64-pc-linux-gnu"                        "x86_64"
>                               os                          system
>                      "linux-gnu"             "x86_64, linux-gnu"
>                           status                           major
>                               ""                             "2"
>                            minor                            year
>                           "15.2"                          "2012"
>                            month                             day
>                             "10"                            "26"
>                          svn rev                        language
>                          "61015"                             "R"
>                   version.string                        nickname
> "R version 2.15.2 (2012-10-26)"                "Trick or Treat"
>
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