[R-sig-Debian] R hangs on the stats.so library
ottorino
ottorino-luca.pantani at unifi.it
Mon Dec 20 15:53:32 CET 2010
Dear all,
I having this problem on my laptop.
It was caused by my clumsy attempts to upgrade the system.
As I wrote here,
(http://www.mail-archive.com/r-sig-debian@r-project.org/msg01364.html)
I was trying to solve the same problem with JAGS/rjags on my laptop.
After typing R in a terminal I'm currently get the following:
> R version 2.9.0 (2009-04-17)
> Copyright (C) 2009 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
>
> ......some unrelevant lines
>
> Loading required package: graphics
> Loading required package: stats
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> impossibile caricare libreria condivisa '/usr/local/lib/R/library/stats/libs/stats.so':
> /usr/local/lib/R/library/stats/libs/stats.so: undefined symbol: _gfortran_pow_r8_i4
> Errore: package 'stats' could not be loaded
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> impossibile caricare libreria condivisa '/usr/local/lib/R/library/stats/libs/stats.so':
> /usr/local/lib/R/library/stats/libs/stats.so: undefined symbol: _gfortran_pow_r8_i4
> Durante l'avvio - Warning message:
> package stats in options("defaultPackages") was not found
> >
What I did before:
sudo nano /etc/apt/sources.list
The file sources.list contains the following lines
######################################################
deb http://it.archive.ubuntu.com/ubuntu/ lucid main restricted
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid main restricted
deb http://it.archive.ubuntu.com/ubuntu/ lucid-updates main restricted
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid-updates main
restricted
deb http://it.archive.ubuntu.com/ubuntu/ lucid universe
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid universe
deb http://it.archive.ubuntu.com/ubuntu/ lucid-updates universe
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid-updates universe
deb http://it.archive.ubuntu.com/ubuntu/ lucid multiverse
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid multiverse
deb http://it.archive.ubuntu.com/ubuntu/ lucid-updates multiverse
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid-updates multiverse
deb http://security.ubuntu.com/ubuntu lucid-security main restricted
deb-src http://security.ubuntu.com/ubuntu lucid-security main restricted
deb http://security.ubuntu.com/ubuntu lucid-security universe
deb-src http://security.ubuntu.com/ubuntu lucid-security universe
deb http://security.ubuntu.com/ubuntu lucid-security multiverse
deb-src http://security.ubuntu.com/ubuntu lucid-security multiverse
deb http://cran.stat.unipd.it/bin/linux/ubuntu lucid/
deb http://it.archive.ubuntu.com/ubuntu/ lucid-backports main restricted
universe
######################################################
Then I did:
sudo apt-get update
sudo apt-get upgrade
and then a lot of clumsy commands to try to recover from the situation.
I can post them all if necessary, but basically they were:
sudo apt-get remove r-base
sudo apt-get remove r-base-core
sudo apt-get install r-base-core
sudo apt-get remove r-base-core r-dev
sudo apt-get install r-base-core r-dev r-recommended
and similar attempts.
Since I was getting some error from R I probaly worsen th situation
typing:
sudo apt-get install libmpc
sudo apt-get install r-devel
whereis libgfortran
whereis libgfortran.so.2
sudo apt-get install libgfortran3
sudo apt-get install libgfortran3-dev
sudo apt-get install libgfortran2
sudo apt-get install libgfortran3-dbg
R
sudo apt-get remove libgfortran3-dbg
sudo apt-get install build-essential
sudo apt-get install r-base-core r-doc-info r-mathlib r-recommended
R
sudo apt-get install r-base-dev
sudo apt-get install f2c
R
sudo apt-get install r-base-core r-doc-info r-mathlib r-recommended
sudo apt-get remove r-base-core r-doc-info r-mathlib r-recommended
r-base-dev
sudo apt-get install r-base-core r-doc-info r-mathlib r-recommended
r-base-dev
R
sudo apt-get remove f2c
sudo apt-get install g++ gfortran
sudo apt-get autoremove
I do not exactly remember why I gave the above commands, since all the
above happened about one month ago, but I remember that the problem was
caused by libgfortran.so.2
Could please someone help me to escape from this situation ?
Thanks
--
Ottorino-Luca Pantani, Università di Firenze
on laptop
Ubuntu 10.04 -- GNOME 2.30.2
GNU Emacs 23.1.50.1 (i486-pc-linux-gnu, GTK+ Version
2.18.0)
ESS version 5.12 -- R 2.9.0
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