[R-sig-Debian] JAVA_CPPFLAGS == ~autodetect~

[Michael Rutter]

Whit,

Those results came for the apt-get binaries available on CRAN.  I
would recommend those, as we update them very quickly and there are
fewer issues like the one you are having.

Michael

On Mon, May 4, 2009 at 9:29 PM, Whit Armstrong <armstrong.whit at gmail.com> wrote:
> Thanks, Michael.
>
> Is that after compiling form source? or a version of R from ubnutu/apt-get?
>
> My issues were from R 2.9 and 2.8 compiled from source.  However, this
> has never been a problem before.
>
> -Whit
>
> On Mon, May 4, 2009 at 5:53 PM, Michael Rutter <mar36 at psu.edu> wrote:
>> Whit,
>>
>> I ran the same command on my Jaunty system and got the following:
>>
>> mrutter at yorick ~/D/R_Stuff> R CMD config JAVA_CPPFLAGS
>> -I/usr/lib/jvm/java-6-openjdk/jre/../include
>>
>> A quick check of my java related packages:
>>
>> ca-certificates-java                            install
>> java-common                                     install
>> libaccess-bridge-java                           install
>> sun-java6-bin                                   install
>> sun-java6-jre                                   install
>> tzdata-java                                     install
>>
>> Maybe this will help.
>>
>> Micheal
>>
>> On Sun, May 3, 2009 at 7:52 PM, Whit Armstrong <armstrong.whit at gmail.com> wrote:
>>> This is happening to me with R 2.9 and 2.8 on jaunty.
>>>
>>> whit at spartan:~$ R CMD config JAVA_CPPFLAGS
>>> ~autodetect~
>>> whit at spartan:~$
>>>
>>>
>>> I can see the "~autodetect~" strings here:
>>> https://svn.r-project.org/R/trunk/m4/java.m4
>>>
>>> but JAVA_LIBS ends up being the correct value in my installation:
>>>
>>> whit at spartan:~/dvl/R.packages$ R CMD config JAVA_LIBS
>>> -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server
>>> -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64
>>> -L/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64 -L/usr/local/lib64
>>> -L/usr/java/packages/lib/amd64 -L/usr/lib64 -L/lib64 -L/lib -L/usr/lib
>>> -ljvm
>>> whit at spartan:~/dvl/R.packages$ R CMD config JAVA_CPPFLAGS
>>> ~autodetect~
>>> whit at spartan:~/dvl/R.packages$
>>>
>>> -Whit
>>>
>>> _______________________________________________
>>> R-SIG-Debian mailing list
>>> R-SIG-Debian at r-project.org
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-debian
>>>
>>
>>
>>
>> --
>> Dr. Michael A. Rutter
>> School of Science
>> Penn State Erie, The Behrend College
>> Station Road
>> Erie, PA 16563
>> http://math.bd.psu.edu/faculty/rutter
>>
>



-- 
Dr. Michael A. Rutter
School of Science
Penn State Erie, The Behrend College
Station Road
Erie, PA 16563
http://math.bd.psu.edu/faculty/rutter