[R-sig-Debian] JAVA_CPPFLAGS == ~autodetect~

[Whit Armstrong]

Thanks, Michael.

Is that after compiling form source? or a version of R from ubnutu/apt-get?

My issues were from R 2.9 and 2.8 compiled from source.  However, this
has never been a problem before.

-Whit

On Mon, May 4, 2009 at 5:53 PM, Michael Rutter <mar36 at psu.edu> wrote:
> Whit,
>
> I ran the same command on my Jaunty system and got the following:
>
> mrutter at yorick ~/D/R_Stuff> R CMD config JAVA_CPPFLAGS
> -I/usr/lib/jvm/java-6-openjdk/jre/../include
>
> A quick check of my java related packages:
>
> ca-certificates-java                            install
> java-common                                     install
> libaccess-bridge-java                           install
> sun-java6-bin                                   install
> sun-java6-jre                                   install
> tzdata-java                                     install
>
> Maybe this will help.
>
> Micheal
>
> On Sun, May 3, 2009 at 7:52 PM, Whit Armstrong <armstrong.whit at gmail.com> wrote:
>> This is happening to me with R 2.9 and 2.8 on jaunty.
>>
>> whit at spartan:~$ R CMD config JAVA_CPPFLAGS
>> ~autodetect~
>> whit at spartan:~$
>>
>>
>> I can see the "~autodetect~" strings here:
>> https://svn.r-project.org/R/trunk/m4/java.m4
>>
>> but JAVA_LIBS ends up being the correct value in my installation:
>>
>> whit at spartan:~/dvl/R.packages$ R CMD config JAVA_LIBS
>> -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server
>> -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64
>> -L/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64 -L/usr/local/lib64
>> -L/usr/java/packages/lib/amd64 -L/usr/lib64 -L/lib64 -L/lib -L/usr/lib
>> -ljvm
>> whit at spartan:~/dvl/R.packages$ R CMD config JAVA_CPPFLAGS
>> ~autodetect~
>> whit at spartan:~/dvl/R.packages$
>>
>> -Whit
>>
>> _______________________________________________
>> R-SIG-Debian mailing list
>> R-SIG-Debian at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/r-sig-debian
>>
>
>
>
> --
> Dr. Michael A. Rutter
> School of Science
> Penn State Erie, The Behrend College
> Station Road
> Erie, PA 16563
> http://math.bd.psu.edu/faculty/rutter
>