[R-pkg-devel] dateset with roxygen2?
John Benninghoff
jbenn|ngho|| @end|ng |rom m@c@com
Wed Sep 24 23:27:04 CEST 2025
Hi Spencer, I tried downloading your GitHub repo. I wasn’t able to replicate your R CMD check results. I did find issues with the DESCRIPTION file, which I fixed by removing the blank “Imports” and running desc::desc_normalize(). After that, running rcmdcheck::rcmdcheck() returned 0 errors, warnings, and notes.
> On Sep 24, 2025, at 3:32 PM, Spencer Graves <spencer.graves using effectivedefense.org> wrote:
>
> Hi, Michael et al.:
>
>
> On 9/24/25 11:59, Michael Chirico wrote:
>> {ggplot2} has a number of data sets, you might read over their sources:
>> https://github.com/tidyverse/ggplot2/blob/main/R/data.R <https:// github.com/tidyverse/ggplot2/blob/main/R/data.R>
>
>
> Thanks. I don't see anything there that is different from the example in their book, which is extracted from the similar data.R file in their tidyr package, which I reviewed earlier.[2]
>
>
> I've deleted virtually everything else in that package and still get that same error.
>
>
> Suggestions?
> Spencer Graves
>
>
> p.s. I've done several web searches on this issue, found discussions on StackOverflow that may have worked a few years ago, but roxygen2 seems to have changes since then. I posted a similar question to StackOverflow, that generated a few comments but nothing that seemed to fix this problem. I reported an "issue" to the R Packages book on GitHub last week, so far with nothing:
>
>
> https://github.com/hadley/r-pkgs/issues/1106
>
>
> I tried to use roxygen2 with a different project a year ago and gave up after being unable to figure out how to use it. >
>> On Wed, Sep 24, 2025 at 5:48 AM Spencer Graves <spencer.graves using effectivedefense.org <mailto:spencer.graves using effectivedefense.org>> wrote:
>> Hello, All:
>> How does one document a dataset with roxygen2?
>> I've recently read Wickham and Bryan, R Packages (2e).[1] I've tried to
>> do what they say there, and R CMD check is reporting:
>> Variables with usage in Rd file 'MaddisonCountries.Rd' but not in
>> code:
>> ‘MaddisonCountries’
>> This is in "https://github.com/sbgraves237/SS4Maddison <https://
>> github.com/sbgraves237/SS4Maddison>".
>> Suggestions? Thanks, Spencer Graves
>> p.s. Wickham and Bryan Section 7.1.2 says, "Objects in data/ are always
>> effectively exported .... . This means that they must be
>> documented. ...
>> [Y]ou document the name of the dataset and save it in R/. For example,
>> the roxygen2 block used to document the who data in tidyr is saved in
>> R/data.R ... . There are two roxygen tags that are especially important
>> for documenting datasets: @format ... @source
>> They give an example of a "who" dataset in tidyr. I've studied that
>> example without finding what I'm doing wrong.[2]
>> In addition, I need to specify Roygen and "LazyData: true" in
>> DESCRIPTION.
>> [1] Wickham and Bryan, R Packages online at:
>> https://r-pkgs.org/ <https://r-pkgs.org/>
>> Chapter 7 deals with Data:
>> https://r-pkgs.org/data.html <https://r-pkgs.org/data.html>
>> [2] "data.R" in tidyr is available at:
>> https://github.com/tidyverse/tidyr/blob/main/R/data.R <https://
>> github.com/tidyverse/tidyr/blob/main/R/data.R>
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