[R-pkg-devel] Two problems with fda

[Spencer Graves]

Hello, All:


	  Jim Ramsay and I have two problems with 
"https://github.com/JamesRamsay5/fda/":


		    1. GitHub action reports, <<'"pdflatex"' not found>> with 
vignettes.  We have two problems with this:  (1.1) We don't know how to 
report them to the "GitHub action" maintainer(s).  (1.2) We don't know 
what in the vignettes require pdflatex, so we cannot easily remove that.


		    2.  A CRAN submission now triggers a "win-builder" pretest on 
Debian, which complains, "fRegress.Rd:325:22: Warning: nested emphasis 
<code>".[1]  We have three problems with this:  (2.1) We cannot find any 
"nested emphasis" to fix in this.  (2.2) We don't know what the numbers 
"325:22" mean.  (2.3) We don't know how to run this win-builder on 
Debian other than to submit a new version to CRAN.  If we could run this 
Debian win-builder without submitting a version to CRAN, we could do a 
binary search submitting "fRegress.Rd" that we would not want to share 
with users but would still pass "R CMD build / check" for us locally 
until we isolated the problem.


	  Suggestions?
	  Thanks,
	  Spencer Graves


[1]
https://win-builder.r-project.org/incoming_pretest/fda_6.0.2_20220422_184836/Debian/00check.log


-------- Forwarded Message --------
Subject: 	Fwd: [CRAN-pretest-archived] CRAN Submission fda 6.0.2
Date: 	Fri, 22 Apr 2022 18:13:56 +0000
From: 	James Owen Ramsay, Dr. <james.ramsay using mcgill.ca>
To: 	Spencer Graves <spencer.graves using effectivedefense.org>



Rejection email:

Jim Ramsay
james.ramsay using mcgill.ca <mailto:james.ramsay using mcgill.ca>



> Begin forwarded message:
>
> *From: *ligges using statistik.tu-dortmund.de 
> <mailto:ligges using statistik.tu-dortmund.de>
> *Subject: **[CRAN-pretest-archived] CRAN Submission fda 6.0.2*
> *Date: *April 22, 2022 at 1:01:55 PM EDT
> *To: *ramsay using psych.mcgill.ca <mailto:ramsay using psych.mcgill.ca>
> *Cc: *CRAN-submissions using R-project.org 
> <mailto:CRAN-submissions using R-project.org>
> *Reply-To: *CRAN-submissions using R-project.org 
> <mailto:CRAN-submissions using R-project.org>
>
> Dear maintainer,
>
> package fda_6.0.2.tar.gz does not pass the incoming checks 
> automatically, please see the following pre-tests:
> Windows: 
> <https://win-builder.r-project.org/incoming_pretest/fda_6.0.2_20220422_184836/Windows/00check.log 
> <https://win-builder.r-project.org/incoming_pretest/fda_6.0.2_20220422_184836/Windows/00check.log>>
> Status: OK
> Debian: 
> <https://win-builder.r-project.org/incoming_pretest/fda_6.0.2_20220422_184836/Debian/00check.log 
> <https://win-builder.r-project.org/incoming_pretest/fda_6.0.2_20220422_184836/Debian/00check.log>>
> Status: 1 NOTE
>
> Last released version's CRAN status: OK: 12
> See: <https://CRAN.R-project.org/web/checks/check_results_fda.html 
> <https://CRAN.R-project.org/web/checks/check_results_fda.html>>
>
> CRAN Web: <https://cran.r-project.org/package=fda 
> <https://cran.r-project.org/package=fda>>
>
> Please fix all problems and resubmit a fixed version via the webform.
> If you are not sure how to fix the problems shown, please ask for help 
> on the R-package-devel mailing list:
> <https://stat.ethz.ch/mailman/listinfo/r-package-devel 
> <https://stat.ethz.ch/mailman/listinfo/r-package-devel>>
> If you are fairly certain the rejection is a false positive, please 
> reply-all to this message and explain.
>
> More details are given in the directory:
> <https://win-builder.r-project.org/incoming_pretest/fda_6.0.2_20220422_184836/ 
> <https://win-builder.r-project.org/incoming_pretest/fda_6.0.2_20220422_184836/>>
> The files will be removed after roughly 7 days.
>
> *** Strong rev. depends ***: adass anacor BayesOrdDesign CausalKinetiX 
> CCA cfda clustEff CollocInfer Compack conformalInference.fd CSTE 
> ctmcmove cyphid dfrr dynr EBCHS Ecfun ExtremalDep FADPclust fda.usc 
> fdaACF fdaMocca fdANOVA fdatest FDRreg flars freqdom.fda ftsa 
> funcharts FuncNN funFEM funHDDC funLBM geofd GPFDA iWISA KFPCA LocKer 
> logitFD mar1s mixedClust MRmediation mxnorm NITPicker pcdpca pCODE 
> pencopulaCond pendensity penDvine PerFit pfica puls PupillometryR 
> quantreg.nonpar refund Rfssa robCompositions Rsfar sasfunclust SCCS 
> sde sft slasso SLFPCA srp stfit switchnpreg T4cluster TestGardener 
> trackeR vows warpMix
>
> Best regards,
> CRAN teams' auto-check service
> Flavor: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
> Check: CRAN incoming feasibility, Result: Note_to_CRAN_maintainers
>  Maintainer: 'J. O. Ramsay <ramsay using psych.mcgill.ca 
> <mailto:ramsay using psych.mcgill.ca>>'
>
> Flavor: r-devel-linux-x86_64-debian-gcc
> Check: HTML version of manual, Result: NOTE
>  Found the following problems:
>  fRegress.Rd:325:22: Warning: nested emphasis <code>