[R-pkg-devel] FW: [EXTERNAL] [CRAN-pretest-archived] CRAN submission surfaltr 1.0.0.9000

[Pooja Gangras]

Hi all,

PFA the pre-check results for my package surfaltr from CRAN. I am having troubles with a package dependency on Debian that I am not able to fix. 2 functions in my package require a Bioconductor package msa (https://bioconductor.org/packages/release/bioc/html/msa.html). To deal with this error, I tried the following solution of adding a call to BiocManager and also including a code for msa installation but it did not help:

#' @importFrom BiocManager install
#' @import msa
.
.
.
Foo() {
if (!requireNamespace("msa", quietly = TRUE)){
    BiocManager::install("msa")}
}

How do I solve the problem so that I don't generate this error with Debian?

Thank you,
Pooja


Pooja Gangras, Ph.D.
Postdoctoral Research Scientist - RNA Therapeutics
Eli Lilly and Company
Lilly Corporate Center, Indianapolis IN 46285 U.S.A.
Office phone number: (317) 651-0589
Cellphone number: (614) 906-0940
gangras_pooja using lilly.com | www.lilly.com


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-----Original Message-----
From: ligges using statistik.tu-dortmund.de <ligges using statistik.tu-dortmund.de> 
Sent: Monday, August 16, 2021 10:32 AM
To: Pooja Gangras <gangras_pooja using lilly.com>
Cc: CRAN-submissions using R-project.org
Subject: [EXTERNAL] [CRAN-pretest-archived] CRAN submission surfaltr 1.0.0.9000

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Dear maintainer,
 
package surfaltr_1.0.0.9000.tar.gz does not pass the incoming checks automatically, please see the following pre-tests:
Windows: <https://win-builder.r-project.org/incoming_pretest/surfaltr_1.0.0.9000_20210816_162209/Windows/00check.log>
Status: 1 NOTE
Debian: <https://win-builder.r-project.org/incoming_pretest/surfaltr_1.0.0.9000_20210816_162209/Debian/00check.log>
Status: 1 ERROR, 1 NOTE
 

 
Please fix all problems and resubmit a fixed version via the webform.
If you are not sure how to fix the problems shown, please ask for help on the R-package-devel mailing list:
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>
If you are fairly certain the rejection is a false positive, please reply-all to this message and explain.
 
More details are given in the directory:
<https://win-builder.r-project.org/incoming_pretest/surfaltr_1.0.0.9000_20210816_162209/>
The files will be removed after roughly 7 days.
 
No strong reverse dependencies to be checked.
 
Best regards,
CRAN teams' auto-check service

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