[R-pkg-devel] CRAN submission with warnings

[Kent Johnson]

Thanks, Duncan,

I did consult with Dirk about the warnings. The #pragma in Boost headers which disables those warnings is not allowed in a CRAN submission, so he removed the #pragma, enabling the warnings.

I see that Boost does call std::abort in its error handling. I don't think I can do anything about that...

Kent

________________________________
From: Duncan Murdoch <murdoch.duncan using gmail.com>
Sent: Monday, July 26, 2021 3:12 PM
To: Kent Johnson <kjohnson using akoyabio.com>; r-package-devel using r-project.org <r-package-devel using r-project.org>
Subject: Re: [R-pkg-devel] CRAN submission with warnings

Regarding the issues:

Since one of them comes from the BH package rather than yours, you might
want to talk to Dirk for advice about it.

The second issue you mention in your comment looks more serious:
"Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found
'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf',
possibly from 'printf' (C)".

Your response that you don't call 'abort', 'exit' or 'printf' isn't
sufficient here: those functions appear to have been linked in to your
DLL, so somebody is calling them. I'd try to track down those calls and
see if there's a way to compile without them.

Duncan Murdoch

>
> win-builder results are here: https://win-builder.r-project.org/incoming_pretest/rtree_0.2.0_20210721_153225/Windows/00check.log<https://win-builder.r-project.org/incoming_pretest/rtree_0.2.0_20210721_153225/Windows/00check.log>
> cran-comments.md here: https://github.com/akoyabio/rtree/blob/master/cran-comments.md<https://github.com/akoyabio/rtree/blob/master/cran-comments.md>
>
> Thank you for any guidance,
> Kent Johnson
> Akoya Biosciences
>
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