[R-pkg-devel] package test returns error when R version 4.1.0

Mon Jul 5 23:46:54 CEST 2021

Gm:

Did you try completely removing the LazyData line from the description file?

David

From: Gianmarco Alberti <gianmarcoalberti using gmail.com> 
Sent: Monday, July 5, 2021 5:13 PM
To: r-package-devel using r-project.org; Uwe Ligges <ligges using statistik.tu-dortmund.de>; dbosak01 using gmail.com
Subject: RE: [R-pkg-devel] package test returns error when R version 4.1.0

Hello, 

Thank you all for the suggestions.

I am starting being a bit worried because I seem not being able to fix the issue.

I have never experienced issues with this package (movecost); 

the last new version I have released to CRAN was released a couple of weeks ago with no issue whatsoever.

The new version I am trying to get on CRAN has just one difference: the ‘chorn’ package has been added to the dependencies.

Now, I have tried to drop that new dependency, and I have run the tests. Same result.

The test using devtools::check_win_release() and devtools::check_win_devel() both return 1 error (lazy loading failed for package ‘movecost’)

The test using devtools::check_win_oldrelease() is OK.

I also tried to keep the new dependency and to drop the lazy download instead (in DESCRIPTION I have put LazyData: false). I got the same results as above.

The package checks perfectly on my MAC, and checked perfectly when I asked a Win users to test the package on his PC (with the latest version of R).

I am really scratching my head.

Best

Gm

************************************************

Dr Gianmarco Alberti (PhD Udine)

Lecturer in Spatial Forensics
Coordinator of the BA dissertations

Department of Criminology

Faculty for Social Wellbeing

Room 332, Humanities B (FEMA)

University of Malta, Msida, Malta (Europe) - MSD 2080

tel +356 2340 3718

Academic profiles

https://www.researchgate.net/profile/Gianmarco_Alberti4

https://malta.academia.edu/GianmarcoAlberti

Google Scholar profile

https://scholar.google.com/citations?user=tFrJKQ0AAAAJ <https://scholar.google.com/citations?user=tFrJKQ0AAAAJ&hl=en> &hl=en

Correspondence Analysis website

http://cainarchaeology.weebly.com/

R packages on CRAN:

CAinterprTools

https://cran.r-project.org/web/packages/CAinterprTools/index.html

GmAMisc

https://cran.r-project.org/package=GmAMisc

movecost

https://cran.r-project.org/web/packages/movecost/index.html

************************************************

On 5 Jul 2021, 13:25 +0200, dbosak01 using gmail.com <mailto:dbosak01 using gmail.com> , wrote:

For the lazy loading error, if you are not intentionally lazy loading data, you should remove the lazy loading entry from the description file. Previously this was not causing any problems with the CRAN checks, but now it is.

-----Original Message-----
From: R-package-devel <r-package-devel-bounces using r-project.org <mailto:r-package-devel-bounces using r-project.org> > On Behalf Of Gianmarco Alberti
Sent: Monday, July 5, 2021 5:27 AM
To: r-package-devel using r-project.org <mailto:r-package-devel using r-project.org> ; Uwe Ligges <ligges using statistik.tu-dortmund.de <mailto:ligges using statistik.tu-dortmund.de> >
Subject: Re: [R-pkg-devel] package test returns error when R version 4.1.0

Hello,
Thanks for your reply.

I got mixed results using:
devtools::check_win_oldrelease() - STATUS OK (R version 4.0.5) - https://win-builder.r-project.org/7qy6PL8C7ye7

devtools::check_win_release() - 1 ERROR (R version 4.1.0) - https://win-builder.r-project.org/hlA15dFq5BdR

devtools::check_win_devel() - 1 ERROR (R Under development (unstable) - https://win-builder.r-project.org/uQ0LGZ7v0E5h

The reported error is to be:
ERROR: lazy loading failed for package ‘movecost’

Since I couldn’t understand the actual underlying issue, I ran devtools::check_rhub() (as described in my earlier email) which brought to the fore the Bioconductor issue.

I have tested the package on Win (R version 4.1) and everything was fine.

I hope I have addressed your question.
Please let me know if you need any other relevant info from my end.

Best
Gm

************************************************
Dr Gianmarco Alberti (PhD Udine)
Lecturer in Spatial Forensics
Coordinator of the BA dissertations
Department of Criminology
Faculty for Social Wellbeing
Room 332, Humanities B (FEMA)
University of Malta, Msida, Malta (Europe) - MSD 2080 tel +356 2340 3718

Academic profiles
https://www.researchgate.net/profile/Gianmarco_Alberti4
https://malta.academia.edu/GianmarcoAlberti

Google Scholar profile
https://scholar.google.com/citations?user=tFrJKQ0AAAAJ <https://scholar.google.com/citations?user=tFrJKQ0AAAAJ&hl=en> &hl=en

Correspondence Analysis website
http://cainarchaeology.weebly.com/

R packages on CRAN:
CAinterprTools
https://cran.r-project.org/web/packages/CAinterprTools/index.html

GmAMisc
https://cran.r-project.org/package=GmAMisc

movecost
https://cran.r-project.org/web/packages/movecost/index.html
************************************************
On 5 Jul 2021, 11:20 +0200, Uwe Ligges <ligges using statistik.tu-dortmund.de <mailto:ligges using statistik.tu-dortmund.de> >, wrote:

What happens when you test it on winbuilder?
It is configured like the CRAN incoming checks and there should be all
relevant packages available.

Best,
Uwe Ligges

On 05.07.2021 11:16, Gianmarco Alberti wrote:

Hello,
Further to my earlier email, I think I have located a likely issue, and I would appreciate feedback.

I ran devtools::check_rhub(), and somewhere in the flood of the output I got there is the following message:

Bioconductor does not yet build and check packages for R version 4.2

The complete report that I got from devtools::check_rhub() is here:
https://builder.r-hub.io/status/movecost_1.2.tar.gz-cbda0dbe4d7a4144
98921e9ab2a54aaf

Any idea about how to proceed in order for me to get my package on CRAN?
I am noticing that I am not the only one experiencing that isse (https://github.com/r-hub/rhub/issues/471).

Best
GmA

************************************************
Dr Gianmarco Alberti (PhD Udine)
Lecturer in Spatial Forensics
Coordinator of the BA dissertations
Department of Criminology
Faculty for Social Wellbeing
Room 332, Humanities B (FEMA)
University of Malta, Msida, Malta (Europe) - MSD 2080 tel +356 2340
3718

Academic profiles
https://www.researchgate.net/profile/Gianmarco_Alberti4
https://malta.academia.edu/GianmarcoAlberti

Google Scholar profile
https://scholar.google.com/citations?user=tFrJKQ0AAAAJ <https://scholar.google.com/citations?user=tFrJKQ0AAAAJ&hl=en> &hl=en

Correspondence Analysis website
http://cainarchaeology.weebly.com/

R packages on CRAN:
CAinterprTools
https://cran.r-project.org/web/packages/CAinterprTools/index.html

GmAMisc
https://cran.r-project.org/package=GmAMisc

movecost
https://cran.r-project.org/web/packages/movecost/index.html
************************************************
On 5 Jul 2021, 09:49 +0200, Gianmarco Alberti <gianmarcoalberti using gmail.com <mailto:gianmarcoalberti using gmail.com> >, wrote:

Good morning,

I got stuck on what follows.
I have tested a new version of my package locally (on a MAC), and everything is fine.

I got mixed results using:
devtools::check_win_oldrelease() - STATUS OK (R version 4.0.5) -
https://win-builder.r-project.org/7qy6PL8C7ye7

devtools::check_win_release() - 1 ERROR (R version 4.1.0) -
https://win-builder.r-project.org/hlA15dFq5BdR

devtools::check_win_devel() - 1 ERROR (R Under development
(unstable) - https://win-builder.r-project.org/uQ0LGZ7v0E5h

The reported error seems to be:
ERROR: lazy loading failed for package ‘movecost'

I have asked a friend to run devtools::check() on his Win-based machine (running R version 4.1.0), and the test returned no problems (0 error, 0 warning, 0 notes).

Since I cannot reproduce the error neither on my computer nor on a win-based machine, I am at loss of understanding where the issue actually lies.

I would really appreciate any help and/or suggestion.

Best
Gianmarco

************************************************
Dr Gianmarco Alberti (PhD Udine)
Lecturer in Spatial Forensics
Coordinator of the BA dissertations Department of Criminology
Faculty for Social Wellbeing Room 332, Humanities B (FEMA)
University of Malta, Msida, Malta (Europe) - MSD 2080 tel +356
2340 3718

Academic profiles
https://www.researchgate.net/profile/Gianmarco_Alberti4
https://malta.academia.edu/GianmarcoAlberti

Google Scholar profile
https://scholar.google.com/citations?user=tFrJKQ0AAAAJ <https://scholar.google.com/citations?user=tFrJKQ0AAAAJ&hl=en> &hl=en

Correspondence Analysis website
http://cainarchaeology.weebly.com/

R packages on CRAN:
CAinterprTools
https://cran.r-project.org/web/packages/CAinterprTools/index.html

GmAMisc
https://cran.r-project.org/package=GmAMisc

movecost
https://cran.r-project.org/web/packages/movecost/index.html
************************************************

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