[R-pkg-devel] incomplete final line found on 'growth_model.log'

[Spencer Graves]

       "R CMD build bssm" on a Windows 10 machine ends by complaining, 
"  incomplete final line found on 'growth_model.log'". This problem was 
not fixed by adding a couple of blank lines to 'growth_model.Rmd'.


       Suggestions?
       Thanks,
       Spencer Graves


p.s.  The same command worked fine on a Windows 7 computer.  The "bssm" 
package used here was cloned from 
""https://github.com/sbgraves237/bssm":  This is not identical to 
helski/bssm, but close.


*EXCERPT FROM CMD: *


...
* creating vignettes ... ERROR
--- re-building 'bssm.Rmd' using rmarkdown
[WARNING] Note with key '1' defined at line 318 column 1 but not used.
--- finished re-building 'bssm.Rmd'

--- re-building 'growth_model.Rmd' using rmarkdown
Warning in readLines(log) :
   incomplete final line found on 'growth_model.log'
Error: processing vignette 'growth_model.Rmd' failed with diagnostics:
Failed to compile growth_model.tex. See 
https://yihui.name/tinytex/r/#debugging for debugging tips.
--- failed re-building 'growth_model.Rmd'

SUMMARY: processing the following file failed:
   'growth_model.Rmd'

Error: Vignette re-building failed.
Execution halted


*PLFLATEX.LOG


*2019-09-19 08:11:08,435-0500 INFO  pdflatex - starting with command 
line: C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\pdflatex.exe -halt-on-error 
-interaction=batchmode bssm.tex
2019-09-19 08:11:08,435-0500 WARN  pdflatex - running with administrator 
privileges
2019-09-19 08:11:08,450-0500 INFO  pdflatex - running 'initexmf' to 
refresh the file name database
2019-09-19 08:11:13,734-0500 INFO  pdflatex - running 'initexmf' to 
create font map files
2019-09-19 08:11:22,735-0500 INFO  pdflatex - allowing known shell commands
2019-09-19 08:11:22,735-0500 INFO  pdflatex - enabling input (output) 
from (to) processes
2019-09-19 08:11:22,798-0500 INFO  pdflatex - going to create file: 
pdflatex.fmt
2019-09-19 08:11:31,033-0500 FATAL pdflatex - GUI framework cannot be 
initialized.
2019-09-19 08:11:31,033-0500 FATAL pdflatex - Info:
2019-09-19 08:11:31,033-0500 FATAL pdflatex - Source: 
Libraries\MiKTeX\UI\Qt\mikuiqt.cpp
2019-09-19 08:11:31,033-0500 FATAL pdflatex - Line: 77
2019-09-19 08:11:31,033-0500 INFO  pdflatex - finishing with exit code 1
2019-09-19 08:12:53,079-0500 INFO  pdflatex - starting with command 
line: C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\pdflatex.exe -halt-on-error 
-interaction=batchmode growth_model.tex
2019-09-19 08:12:53,079-0500 WARN  pdflatex - running with administrator 
privileges
2019-09-19 08:12:53,079-0500 INFO  pdflatex - allowing known shell commands
2019-09-19 08:12:53,079-0500 INFO  pdflatex - enabling input (output) 
from (to) processes
2019-09-19 08:12:53,392-0500 FATAL pdflatex - GUI framework cannot be 
initialized.
2019-09-19 08:12:53,392-0500 FATAL pdflatex - Info:
2019-09-19 08:12:53,392-0500 FATAL pdflatex - Source: 
Libraries\MiKTeX\UI\Qt\mikuiqt.cpp
2019-09-19 08:12:53,392-0500 FATAL pdflatex - Line: 77
2019-09-19 08:12:53,392-0500 INFO  pdflatex - finishing with exit code 1
2019-09-19 13:15:45,812-0500 INFO  pdflatex - starting with command 
line: C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\pdflatex.exe -halt-on-error 
-interaction=batchmode growth_model.tex
2019-09-19 13:15:45,815-0500 WARN  pdflatex - running with administrator 
privileges
2019-09-19 13:15:45,819-0500 INFO  pdflatex - allowing known shell commands
2019-09-19 13:15:45,819-0500 INFO  pdflatex - enabling input (output) 
from (to) processes
2019-09-19 13:15:46,231-0500 FATAL pdflatex - GUI framework cannot be 
initialized.
2019-09-19 13:15:46,231-0500 FATAL pdflatex - Info:
2019-09-19 13:15:46,231-0500 FATAL pdflatex - Source: 
Libraries\MiKTeX\UI\Qt\mikuiqt.cpp
2019-09-19 13:15:46,231-0500 FATAL pdflatex - Line: 77
2019-09-19 13:15:46,231-0500 INFO  pdflatex - finishing with exit code 1
2019-09-19 13:22:55,302-0500 INFO  pdflatex - starting with command 
line: C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\pdflatex.exe -halt-on-error 
-interaction=batchmode growth_model.tex
2019-09-19 13:22:55,302-0500 WARN  pdflatex - running with administrator 
privileges
2019-09-19 13:22:55,302-0500 INFO  pdflatex - allowing known shell commands
2019-09-19 13:22:55,302-0500 INFO  pdflatex - enabling input (output) 
from (to) processes
2019-09-19 13:22:55,640-0500 FATAL pdflatex - GUI framework cannot be 
initialized.
2019-09-19 13:22:55,640-0500 FATAL pdflatex - Info:
2019-09-19 13:22:55,640-0500 FATAL pdflatex - Source: 
Libraries\MiKTeX\UI\Qt\mikuiqt.cpp
2019-09-19 13:22:55,640-0500 FATAL pdflatex - Line: 77
2019-09-19 13:22:55,641-0500 INFO  pdflatex - finishing with exit code 1
2019-09-19 13:22:56,136-0500 INFO  pdflatex - starting with command 
line: C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\pdflatex.exe -halt-on-error 
-interaction=batchmode growth_model.tex
2019-09-19 13:22:56,139-0500 WARN  pdflatex - running with administrator 
privileges
2019-09-19 13:22:56,154-0500 INFO  pdflatex - allowing known shell commands
2019-09-19 13:22:56,155-0500 INFO  pdflatex - enabling input (output) 
from (to) processes
2019-09-19 13:22:56,434-0500 FATAL pdflatex - GUI framework cannot be 
initialized.
2019-09-19 13:22:56,435-0500 FATAL pdflatex - Info:
2019-09-19 13:22:56,435-0500 FATAL pdflatex - Source: 
Libraries\MiKTeX\UI\Qt\mikuiqt.cpp
2019-09-19 13:22:56,435-0500 FATAL pdflatex - Line: 77
2019-09-19 13:22:56,435-0500 INFO  pdflatex - finishing with exit code 1
2019-09-19 13:26:01,857-0500 INFO  pdflatex - starting with command 
line: C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\pdflatex.exe -halt-on-error 
-interaction=batchmode growth_model.tex
2019-09-19 13:26:01,873-0500 WARN  pdflatex - running with administrator 
privileges
2019-09-19 13:26:01,873-0500 INFO  pdflatex - allowing known shell commands
2019-09-19 13:26:01,873-0500 INFO  pdflatex - enabling input (output) 
from (to) processes
2019-09-19 13:26:02,188-0500 FATAL pdflatex - GUI framework cannot be 
initialized.
2019-09-19 13:26:02,188-0500 FATAL pdflatex - Info:
2019-09-19 13:26:02,188-0500 FATAL pdflatex - Source: 
Libraries\MiKTeX\UI\Qt\mikuiqt.cpp
2019-09-19 13:26:02,188-0500 FATAL pdflatex - Line: 77
2019-09-19 13:26:02,188-0500 INFO  pdflatex - finishing with exit code 1


*> **sessionInfo() in the Terminal


*R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18362)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] compiler_3.6.1

**


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