[R-pkg-devel] question about "checking for non-standard things in the check directory"

[Simon Penel]

Thanks a lot  , it's worked,

all the best

Simon



Le 03/09/2019 à 14:04, Uwe Ligges a écrit :
>
>
> On 03.09.2019 10:52, Simon Penel wrote:
>> Hello,
>>
>> I would like to  submit a new release of the package seqinr.
>>
>> I am using the following:
>>
>> R CMD check --as-cran
>>
>> * using R Under development (unstable) (2019-09-01 r77119)
>> * using platform: x86_64-pc-linux-gnu (64-bit)
>>
>>
>> Everything worked fine except for  this message:
>>
>> * checking for non-standard things in the check directory ... NOTE
>> Found the following files/directories:
>>    ‘Acinetobacter_ADP1_uid61597.fasta’ ‘ec999.ffn’ ‘ortho3.fasta’
>>    ‘test.revalign’
>>
>> I was unable to find some information about this message.
>>
>> I understand that these files are created  in the check directory 
>> when running the examples, but I don't understand what's the matter 
>> with this?
>
> because you must not write to the user filespace in examples as 
> detailed in the CRAN policies. Please rather write to tempdir() in 
> examples.
>
> Best,
> Uwe Ligges
>
>
>>
>> What should I do to get rid of this NOTE ?
>>
>> thanks for your help
>>
>> All the best,
>>
>> Simon
>>
>>
>>
>>
>>
>>
>>
>>
>>
> .
>

-- 
Simon Penel     ^(;,;)^
Laboratoire de Biometrie et Biologie Evolutive
Bat 711 - CNRS UMR 5558
43 bd du 11 novembre 1918 69622 Villeurbanne Cedex
Tel:   04 72 43 29 04      Fax:  04 72 43 13 88
http://lbbe.univ-lyon1.fr/-Penel-Simon-.html?lang=fr