[R-pkg-devel] Warning Message on Vignettes

[Alexandre Courtiol]

Hi, how to you build your package?

I do:
mkdir -p inst/doc
mkdir vignettes
cp sources_vignettes/*.pdf* vignettes ## for linux add -u after cp
cp sources_vignettes/*.Rnw inst/doc ## for linux add -u after cp
(cd inst/doc/; for f in *.Rnw; do mv "$$f" "$${f%.Rnw}_source.txt"; done;)
Rscript -e "tools::compactPDF(paths = 'vignettes', gs_quality = 'printer')"
Rscript -e "devtools::build()"

Does that work for you?
Alex



On Wed, 3 Jul 2019 at 01:41, Charith Karunarathna <
charith_karunarathna using sfu.ca> wrote:

> (Reposting..)
>
> Hi everyone,
>
> I am getting following two warnings when I submit my R package
> (perfectphyloR) to CRAN.
>
> Warning 1: * checking files in 'vignettes' ... WARNING
>              Files in the 'vignettes' directory but no files in 'inst/doc':
>              'perfectphyloR.html', 'perfectphyloR.html.asis'
>
> Warning 2: * checking package vignettes in 'inst/doc' ... WARNING
>              dir.exists(dir) is not TRUE
>              Package vignette without corresponding single PDF/HTML:
>              'perfectphyloR.html.asis'
>
> I want to make my vignette as a static html vignette (not the PDF).
> Therefore, I followed this documentation,
> https://cran.r-project.org/web/packages/R.rsp/vignettes/R_packages-Static_PDF_and_HTML_vignettes.pdf
>
> After including my html vignette (perfectphyloR.html) into the directory
> 'vignette', I created a file called "perfectphyloR.html.asis" and that file
> includes following lines:
>
> %\VignetteIndexEntry{R packages: perfectphyloR}
> %\VignetteEngine{R.rsp::asis}
> %\VignetteKeyword{HTML}
> %\VignetteKeyword{vignette}
> %\VignetteKeyword{package}
>
> Also, I added 'R.rsp' to the DESCRIPTION file as follows:
> ....
> Suggests:
>     knitr,
>     rmarkdown,
>     R.rsp
> VignetteBuilder: R.rsp
>
> So, I am wondering something is wrong with my .asis file or I am doing any
> other mistake. Could you help me fix this issue?
>
> Thank you in advance!
>
> Regards,
>
> Charith.
>
>
>
>
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-- 
Alexandre Courtiol

http://sites.google.com/site/alexandrecourtiol/home

*"Science is the belief in the ignorance of experts"*, R. Feynman

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