[R-pkg-devel] Checking for future file timestamps - warning with worldclockapi HTTP status 403 Site Disabled

Rainer M Krug R@|ner @end|ng |rom krug@@de
Tue Mar 19 12:11:17 CET 2019


Can anyone confirm if this has been fixed? I would like to remove the _R_CHECK_SYSTEM_CLOCK_=0 but would like to know in advance.

Thanks

Rainer


> On 8 Mar 2019, at 10:03, Gábor Csárdi <csardi.gabor using gmail.com> wrote:
> 
> I think you can put this in appveyor.yml:
> 
> environment:
>   _R_CHECK_SYSTEM_CLOCK_: 0
> 
> before the "build_script" section.
> 
> Gabor
> 
> On Fri, Mar 8, 2019 at 5:15 AM Marta Karaś <marta.karass using gmail.com> wrote:
>> 
>> I have faced the same problem with using http://worldclockapi.com/. I dealt
>> with Travis fail (because warnings are changed to errors) after setting
>> environment variable _R_CHECK_SYSTEM_CLOCK_ to zero, as adviced above.
>> 
>> How I deal with appveyor fail for the same reason? It may be seen in my
>> built output here (link)
>> <https://ci.appveyor.com/project/martakarass/adept/build/job/vq4ncvg6qbh526u4>.
>> I googled but was unable to find the equivalent of
>> 
>> env:
>>  - _R_CHECK_SYSTEM_CLOCK_=0
>> 
>> 
>> for appveyor. Would appreciate any hint a lot - thank you!
>> Marta
>> 
>> On Thu, Mar 7, 2019 at 2:53 PM Hadley Wickham <h.wickham using gmail.com> wrote:
>> 
>>> As of ~7 hours ago, the warning is suppressed:
>>> 
>>> https://github.com/wch/r-source/commit/31ee14c620eb1b939acd322f3b5617f998aab8e8
>>> 
>>> (But the service still doesn't work)
>>> 
>>> Hadley
>>> 
>>> On Thu, Mar 7, 2019 at 11:03 AM Hadley Wickham <h.wickham using gmail.com>
>>> wrote:
>>>> 
>>>> It appears that the code was added by BDR on 2 Sep 2018:
>>>> 
>>> https://github.com/wch/r-source/commit/d839b1e04e173f90b51ad809ef0bdb18095abe6f
>>>> 
>>>> I assume we are seeing failing R CMD check results because
>>>> http://worldclockapi.com/api/json/utc/now has recently died.
>>>> 
>>>> It would be appreciated if someone from R-core could look into this as
>>>> it's currently causing all R-devel builds on travis to fail.
>>>> 
>>>> Hadley
>>>> 
>>>> On Thu, Mar 7, 2019 at 9:32 AM Bob Rudis <bob using rud.is> wrote:
>>>>> 
>>>>> (a) that's gd news (#ty)
>>>>> (b) genuine apologies for my confusion
>>>>> (c) why was the introduction of reliance on a third-party site even
>>> under consideration?
>>>>> 
>>>>>> On Mar 7, 2019, at 09:32, peter dalgaard <pdalgd using gmail.com> wrote:
>>>>>> 
>>>>>> It's not "stealth fixed"! It was never there... (on the release
>>> branch)
>>>>>> 
>>>>>> The timestamp checking code is still present in R-devel. I presume
>>> something needs to be done about the breakage.
>>>>>> 
>>>>>> - pd
>>>>>> 
>>>>>>> On 7 Mar 2019, at 14:38 , Bob Rudis <bob using rud.is> wrote:
>>>>>>> 
>>>>>>> It's fixed in the RC that's GA on the 11th.
>>>>>>> 
>>>>>>> I think perhaps "stealth fixed" may be more appropro since it's not
>>> in SVN logs, Bugzilla nor noted prominently in any of the various NEWS*
>>> files.
>>>>>>> 
>>>>>>> Then there's the "why was the core R installation using a third
>>> party, non-HTTPS site for this to begin with".
>>>>>>> 
>>>>>>> And, in other news, there are tests in the R source that rely on a
>>> check of `foo.bar` for connectivity. `.bar` is a valid domain and `foo.bar`
>>> is registered. Thankfully there's no current IP address associated with it.
>>> Anything under `*.invalid` (https://en.wikipedia.org/wiki/.invalid) might
>>> be a better choice as well since that won't break the reason for the
>>> connectivity checks and won't arbitrarily send telemetry pings to third
>>> parties in the even anyone outside of R Core decides to run the tests (say,
>>> when patching something in R).
>>>>>>> 
>>>>>>> -boB
>>>>>>> 
>>>>>>>> On Mar 7, 2019, at 07:54, Rainer M Krug <Rainer using krugs.de> wrote:
>>>>>>>> 
>>>>>>>> I can confirm the same when checking on travis with r-devel.
>>>>>>>> 
>>>>>>>> And thanks for the tip with
>>>>>>>> 
>>>>>>>> env:
>>>>>>>> - _R_CHECK_SYSTEM_CLOCK_=0
>>>>>>>> 
>>>>>>>> In .travis.yml
>>>>>>>> 
>>>>>>>> Seems to be working now
>>>>>>>> 
>>>>>>>> Rainer
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>>> On 7 Mar 2019, at 12:48, Ralf Herold <ralf.herold using mailbox.org>
>>> wrote:
>>>>>>>>> 
>>>>>>>>> Dear All,
>>>>>>>>> 
>>>>>>>>> Checking a new package under development produces a warning in a
>>> local R-devel MS Windows environment (output below).
>>>>>>>>> 
>>>>>>>>> Building it with R-devel on Travis fails (because warnings are
>>> changed to errors), but is successful when setting environment variable
>>> _R_CHECK_SYSTEM_CLOCK_ to zero.
>>>>>>>>> 
>>>>>>>>> No issue occurs when checking and building with R-stable and
>>> R-oldrel on Travis, or with any R version on win-builder.r-project.org.
>>>>>>>>> 
>>>>>>>>> The warning concerns using http://worldclockapi.com/, which
>>> however seems out of service ("The web app you have attempted to reach is
>>> currently stopped and does not accept any requests."). This is referenced
>>> in the main function for R CMD check (
>>> https://svn.r-project.org/R/trunk/src/library/tools/R/check.R) and may
>>> concern more R-devel than R-package-devel. I am posting here to check if
>>> the issue was noticed by other package developers and to check the impact.
>>>>>>>>> 
>>>>>>>>> Thanks for any suggestions.
>>>>>>>>> Best regards,
>>>>>>>>> Ralf
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> PS C:\Users\username> & 'C:\Program Files\R\R-devel\bin\R.exe'
>>> CMD check E:\mypackage_0.1.2.3.tar.gz --as-cran
>>>>>>>>> * using log directory 'C:/Users/username/ctrdata.Rcheck'
>>>>>>>>> * using R Under development (unstable) (2019-03-05 r76200)
>>>>>>>>> * using platform: x86_64-w64-mingw32 (64-bit)
>>>>>>>>> * using session charset: ISO8859-1
>>>>>>>>> * using option '--as-cran'
>>>>>>>>> [...]
>>>>>>>>> * checking package directory ... OK
>>>>>>>>> * checking for future file timestamps ...Warning in file(con,
>>> "r") :
>>>>>>>>> cannot open URL 'http://worldclockapi.com/api/json/utc/now':
>>> HTTP status was '403 Site Disabled'
>>>>>>>>> WARNING
>>>>>>>>> unable to verify current time
>>>>>>>>> * checking 'build' directory … OK
>>>>>>>>> [...]
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> ## Ralf Herold
>>>>>>>>> ## mailto: ralf.herold using mailbox.org [S/MIME]
>>>>>>>>> ## https://paediatricdata.eu/
>>>>>>>>> 
>>>>>>>>> ______________________________________________
>>>>>>>>> R-package-devel using r-project.org mailing list
>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> --
>>>>>>>> Rainer M. Krug
>>>>>>>> email: Rainer<at>krugs<dot>de
>>>>>>>> PGP: 0x0F52F982
>>>>>>>> 
>>>>>>>> 
>>>>>>>>    [[alternative HTML version deleted]]
>>>>>>>> 
>>>>>>>> ______________________________________________
>>>>>>>> R-package-devel using r-project.org mailing list
>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>>>>>> 
>>>>>>> ______________________________________________
>>>>>>> R-package-devel using r-project.org mailing list
>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>>>>> 
>>>>>> --
>>>>>> Peter Dalgaard, Professor,
>>>>>> Center for Statistics, Copenhagen Business School
>>>>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
>>>>>> Phone: (+45)38153501
>>>>>> Office: A 4.23
>>>>>> Email: pd.mes using cbs.dk  Priv: PDalgd using gmail.com
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>> 
>>>>> ______________________________________________
>>>>> R-package-devel using r-project.org mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>>> 
>>>> 
>>>> 
>>>> --
>>>> http://hadley.nz
>>> 
>>> 
>>> 
>>> --
>>> http://hadley.nz
>>> 
>>> ______________________________________________
>>> R-package-devel using r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>> 
>> 
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>> 
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