[R-pkg-devel] Bioconductor dependencies => Windows checks failed

[Matthew Hall]

Sure, sorry.

http://win-builder.r-project.org/incoming_pretest/STraTUS_1.1_20190227_144139/Windows/00check.log
http://win-builder.r-project.org/incoming_pretest/STraTUS_1.1_20190227_144139/Windows/00install.out

(the typo in the title is obviously gone)



On 27 February 2019 at 14:42:23, Martin Morgan (mtmorgan.bioc using gmail.com<mailto:mtmorgan.bioc using gmail.com>) wrote:

Bioconductor 3.8 is the current release version of Bioconductor, and should be used by CRAN for current release versions of R. This seems perhaps like a stale installation on the Windows machine.

A link to the actual check report would be helpful.

Martin

On 2/27/19, 9:25 AM, "R-package-devel on behalf of Matthew Hall" <r-package-devel-bounces using r-project.org on behalf of matthew.hall using bdi.ox.ac.uk> wrote:

Hello,

I’ve just tried to submit a package to CRAN which has a Bioconductor dependency (ggtree, specifically). It passes checks on MacOS and Debian, but fails on Windows with the error:

Error: object 'as_data_frame' is not exported by 'namespace:tidytree'

The official ggtree developer solution to this known issue is to upgrade to Bioconductor 3.8, so I’m guessing the version used in the check is earlier? Is there anything I can do?

Thanks, Matthew

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