[R-pkg-devel] About a need for hooks from R CMD ... commands, and a question

Martin Morgan mtmorg@n@bioc @ending from gm@il@com
Fri Jan 4 20:37:15 CET 2019


Add a tag to the DESCRIPTION file or configure.ac-like indicating the git (presumably) revision, perhaps like https://stackoverflow.com/a/11535358/547331 ?

On 1/4/19, 1:42 PM, "R-package-devel on behalf of Dirk Eddelbuettel" <r-package-devel-bounces using r-project.org on behalf of edd using debian.org> wrote:

    
    On 4 January 2019 at 19:24, Iñaki Ucar wrote:
    | On Fri, 4 Jan 2019 at 16:43, Dirk Eddelbuettel <edd using debian.org> wrote:
    | >
    | >
    | > For a few years now I had mused about how nice it would be to have other
    | > scripts triggered like `cleanup`.  For Rcpp, it would be nice to run
    | > compileAttributes(). For roxygen2, it would be nice to run roxygenize()
    | > (especially if that continued to work the way it did, but I digress).
    | > That was mostly a "wouldn't it be nice" question and not that urgent as I
    | > wrote myself littler scripts for most tasks anyway.
    | >
    | > But I now have a related problem at work. We are authoring C++ libraries and
    | > R packages 'mono-repo' style. And I need to reference builds of the R
    | > packages back to the repo branches / repo directories used where R CMD build
    | > ran in a branch -- in order to at R CMD INSTALL time access the matching
    | > header files and libraries from that branch.  I do not see an obvious way of
    | > encoding this in the .tar.gz created by the R CMD build step. The best I can
    | > think of is creating binaries via R CMD INSTALL --build instead of creating
    | > source tarballs.
    | >
    | > Is there something better I am missing? Any hacks, hints, or ideas?
    | 
    | I'm not sure whether I understand correctly what you are trying to
    | achieve. Isn't generating a custom configure script enough for your
    | needs?
    
    That is what I thought yesterday when I wrote / updated and tested those.
    They work great when you install from source as they have access to shell's
    ${PWD} and R's getwd().
    
    But when you run R CMD build, (essentially) just cleanup and a tar are
    running. No other code. Hence my Subject: here -- a need for a hook.
    
    Once you have built a .tar.gz and run R CMD INSTALL on it, R goes off to
    _another temporary directory_ and while configure may be running ... you are
    no longer in the directory you called it from. So I have now lost the
    connection to the particular variant of headers and libraries I may have had
    in that branch.
    
    Doing R CMD INSTALL --build ... is a workaround.  But it still would be nice
    to have an explicit hook.
    
    Hope this explains it better, and thanks for the follow-up.
    
    Dirk
    
    -- 
    http://dirk.eddelbuettel.com | @eddelbuettel | edd using debian.org
    
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