[R-pkg-devel] Trying to compile R-3.5.1 with openblas for windows

[Erin Hodgess]

Finally got Openblas installed!  The speed up is amazing!  Thanks for your
help and patience.

Sincerely,
Erin

Erin Hodgess, PhD
mailto: erinm.hodgess using gmail.com


On Fri, Sep 14, 2018 at 2:46 PM Avraham Adler <avraham.adler using gmail.com>
wrote:

> No, I’m sorry, I haven’t seen that and I built R 3.5.1 with OpenBLAS
> recently. Does it work if you use the vanilla BLAS?
>
> Avi
>
> On Fri, Sep 14, 2018 at 4:14 PM Erin Hodgess <erinm.hodgess using gmail.com>
> wrote:
>
>> Hi again!
>>
>> I checked everything, did "make distribution" and the same thing occurred.
>>
>>
>> d:/Rtools/mingw_64/bin/ar -rucs ../SuiteSparse_config.a
>> SuiteSparse_config.o
>> D:\Rtools\mingw_64\bin\nm.exe: 'sublibs': No such file
>> d:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Matrix.dll
>> tmp.def CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o
>> chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o
>> dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o
>> dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o
>> sparseQR.o abIndex.o -LD:/erinm/R-3.5.1/bin/x64 -lRlapack
>> -LD:/erinm/R-3.5.1/bin/x64 -lRblas -LD:/erinm/R-3.5.1/extsoft/lib/x64
>> -LD:/erinm/R-3.5.1/extsoft/lib -LD:/erinm/R-3.5.1/bin/x64 -lR
>> CHMfactor.o:CHMfactor.c:(.text+0x3b): undefined reference to
>> `cholmod_copy_factor'
>> CHMfactor.o:CHMfactor.c:(.text+0x7b): undefined reference to
>> `cholmod_change_factor'
>> CHMfactor.o:CHMfactor.c:(.text+0x92): undefined reference to
>> `cholmod_factor_to_sparse'
>> CHMfactor.o:CHMfactor.c:(.text+0xa5): undefined reference to
>> `cholmod_free_factor'
>> CHMfactor.o:CHMfactor.c:(.text+0x18e): undefined reference to
>> `cholmod_solve'
>> CHMfactor.o:CHMfactor.c:(.text+0x267): undefined reference to
>> `cholmod_copy_factor'
>> CHMfactor.o:CHMfactor.c:(.text+0x27e): undefined reference to
>> `cholmod_updown'
>> CHMfactor.o:CHMfactor.c:(.text+0x396): undefined reference to
>> `cholmod_spsolve'
>> CHMfactor.o:CHMfactor.c:(.text+0x620): undefined reference to
>> `cholmod_factorize_p'
>> CHMfactor.o:CHMfactor.c:(.text+0x658): undefined reference to
>> `cholmod_change_factor'
>> CHMfactor.o:CHMfactor.c:(.text+0x720): undefined reference to
>> `cholmod_copy_factor'
>> CHMfactor.o:CHMfactor.c:(.text+0x87b): undefined reference to
>> `cholmod_copy_factor'
>> CHMfactor.o:CHMfactor.c:(.text+0x8c3): undefined reference to
>> `cholmod_free_factor'
>> Csparse.o:Csparse.c:(.text+0x9f1): undefined reference to
>> `cholmod_sparse_to_dense'
>> Csparse.o:Csparse.c:(.text+0xcd6): undefined reference to `cholmod_speye'
>> Csparse.o:Csparse.c:(.text+0xd21): undefined reference to `cholmod_add'
>> Csparse.o:Csparse.c:(.text+0xd31): undefined reference to
>> `cholmod_free_sparse'
>> Csparse.o:Csparse.c:(.text+0xd3d): undefined reference to
>> `cholmod_copy_sparse'
>> Csparse.o:Csparse.c:(.text+0xd4c): undefined reference to
>> `cholmod_free_sparse'
>> Csparse.o:Csparse.c:(.text+0xdf9): undefined reference to `cholmod_copy'
>>
>> Does this look familiar, please?
>>
>> Thanks,
>> Erin
>>
>> Erin Hodgess, PhD
>> mailto: erinm.hodgess using gmail.com
>>
>>
>> On Fri, Sep 14, 2018 at 1:13 PM Avraham Adler <avraham.adler using gmail.com>
>> wrote:
>>
>>> Try following the directions here. They have worked for me for years.
>>> Please see the comments too.
>>>
>>> https://www.avrahamadler.com/r-tips/build-openblas-for-windows-r64/
>>>
>>> Hope that helps,
>>>
>>> Avi
>>>
>>> On Fri, Sep 14, 2018 at 2:34 PM Erin Hodgess <erinm.hodgess using gmail.com>
>>> wrote:
>>>
>>>> Hello!
>>>>
>>>> I'm building a package that needs Openblas for matrix manipulation
>>>> speed up.
>>>>
>>>> I built Openblas on Windows 10.  I updated the MkRules.local,
>>>> src/extra/blas/Makefile.win, etc.  Things are working with "make all".
>>>>
>>>> However, when I run "make recommended", I have trouble with the Matrix
>>>> package build.  The components of the Cholesky all appear as
>>>> unreferenced.
>>>>
>>>> Has anyone else run into this, please?  I'm working with R-3.5.1 source.
>>>>
>>>> Thanks,
>>>> Erin
>>>>
>>>> Erin Hodgess, PhD
>>>> mailto: erinm.hodgess using gmail.com
>>>>
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>>>>
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