[R-pkg-devel] Trying to compile R-3.5.1 with openblas for windows

[Erin Hodgess]

I have a snag on regular BLAS as well.  I feel better about the Open BLAS

On Fri, Sep 14, 2018 at 2:47 PM Erin Hodgess <erinm.hodgess using gmail.com>
wrote:

> That is my next thing to try.  Thanks for your help!
>
>
> Erin Hodgess, PhD
> mailto: erinm.hodgess using gmail.com
>
>
> On Fri, Sep 14, 2018 at 2:46 PM Avraham Adler <avraham.adler using gmail.com>
> wrote:
>
>> No, I’m sorry, I haven’t seen that and I built R 3.5.1 with OpenBLAS
>> recently. Does it work if you use the vanilla BLAS?
>>
>> Avi
>>
>> On Fri, Sep 14, 2018 at 4:14 PM Erin Hodgess <erinm.hodgess using gmail.com>
>> wrote:
>>
>>> Hi again!
>>>
>>> I checked everything, did "make distribution" and the same thing
>>> occurred.
>>>
>>>
>>> d:/Rtools/mingw_64/bin/ar -rucs ../SuiteSparse_config.a
>>> SuiteSparse_config.o
>>> D:\Rtools\mingw_64\bin\nm.exe: 'sublibs': No such file
>>> d:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Matrix.dll
>>> tmp.def CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o
>>> chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o
>>> dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o
>>> dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o
>>> sparseQR.o abIndex.o -LD:/erinm/R-3.5.1/bin/x64 -lRlapack
>>> -LD:/erinm/R-3.5.1/bin/x64 -lRblas -LD:/erinm/R-3.5.1/extsoft/lib/x64
>>> -LD:/erinm/R-3.5.1/extsoft/lib -LD:/erinm/R-3.5.1/bin/x64 -lR
>>> CHMfactor.o:CHMfactor.c:(.text+0x3b): undefined reference to
>>> `cholmod_copy_factor'
>>> CHMfactor.o:CHMfactor.c:(.text+0x7b): undefined reference to
>>> `cholmod_change_factor'
>>> CHMfactor.o:CHMfactor.c:(.text+0x92): undefined reference to
>>> `cholmod_factor_to_sparse'
>>> CHMfactor.o:CHMfactor.c:(.text+0xa5): undefined reference to
>>> `cholmod_free_factor'
>>> CHMfactor.o:CHMfactor.c:(.text+0x18e): undefined reference to
>>> `cholmod_solve'
>>> CHMfactor.o:CHMfactor.c:(.text+0x267): undefined reference to
>>> `cholmod_copy_factor'
>>> CHMfactor.o:CHMfactor.c:(.text+0x27e): undefined reference to
>>> `cholmod_updown'
>>> CHMfactor.o:CHMfactor.c:(.text+0x396): undefined reference to
>>> `cholmod_spsolve'
>>> CHMfactor.o:CHMfactor.c:(.text+0x620): undefined reference to
>>> `cholmod_factorize_p'
>>> CHMfactor.o:CHMfactor.c:(.text+0x658): undefined reference to
>>> `cholmod_change_factor'
>>> CHMfactor.o:CHMfactor.c:(.text+0x720): undefined reference to
>>> `cholmod_copy_factor'
>>> CHMfactor.o:CHMfactor.c:(.text+0x87b): undefined reference to
>>> `cholmod_copy_factor'
>>> CHMfactor.o:CHMfactor.c:(.text+0x8c3): undefined reference to
>>> `cholmod_free_factor'
>>> Csparse.o:Csparse.c:(.text+0x9f1): undefined reference to
>>> `cholmod_sparse_to_dense'
>>> Csparse.o:Csparse.c:(.text+0xcd6): undefined reference to `cholmod_speye'
>>> Csparse.o:Csparse.c:(.text+0xd21): undefined reference to `cholmod_add'
>>> Csparse.o:Csparse.c:(.text+0xd31): undefined reference to
>>> `cholmod_free_sparse'
>>> Csparse.o:Csparse.c:(.text+0xd3d): undefined reference to
>>> `cholmod_copy_sparse'
>>> Csparse.o:Csparse.c:(.text+0xd4c): undefined reference to
>>> `cholmod_free_sparse'
>>> Csparse.o:Csparse.c:(.text+0xdf9): undefined reference to `cholmod_copy'
>>>
>>> Does this look familiar, please?
>>>
>>> Thanks,
>>> Erin
>>>
>>> Erin Hodgess, PhD
>>> mailto: erinm.hodgess using gmail.com
>>>
>>>
>>> On Fri, Sep 14, 2018 at 1:13 PM Avraham Adler <avraham.adler using gmail.com>
>>> wrote:
>>>
>>>> Try following the directions here. They have worked for me for years.
>>>> Please see the comments too.
>>>>
>>>> https://www.avrahamadler.com/r-tips/build-openblas-for-windows-r64/
>>>>
>>>> Hope that helps,
>>>>
>>>> Avi
>>>>
>>>> On Fri, Sep 14, 2018 at 2:34 PM Erin Hodgess <erinm.hodgess using gmail.com>
>>>> wrote:
>>>>
>>>>> Hello!
>>>>>
>>>>> I'm building a package that needs Openblas for matrix manipulation
>>>>> speed up.
>>>>>
>>>>> I built Openblas on Windows 10.  I updated the MkRules.local,
>>>>> src/extra/blas/Makefile.win, etc.  Things are working with "make all".
>>>>>
>>>>> However, when I run "make recommended", I have trouble with the Matrix
>>>>> package build.  The components of the Cholesky all appear as
>>>>> unreferenced.
>>>>>
>>>>> Has anyone else run into this, please?  I'm working with R-3.5.1
>>>>> source.
>>>>>
>>>>> Thanks,
>>>>> Erin
>>>>>
>>>>> Erin Hodgess, PhD
>>>>> mailto: erinm.hodgess using gmail.com
>>>>>
>>>>>         [[alternative HTML version deleted]]
>>>>>
>>>>> ______________________________________________
>>>>> R-package-devel using r-project.org mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>>>>
>>>> --
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>>>>
>>> --
>> Sent from Gmail Mobile
>>
> --
Erin Hodgess, PhD
mailto: erinm.hodgess using gmail.com

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