[R-pkg-devel] Trying to compile R-3.5.1 with openblas for windows

[Avraham Adler]

No, I’m sorry, I haven’t seen that and I built R 3.5.1 with OpenBLAS
recently. Does it work if you use the vanilla BLAS?

Avi

On Fri, Sep 14, 2018 at 4:14 PM Erin Hodgess <erinm.hodgess using gmail.com>
wrote:

> Hi again!
>
> I checked everything, did "make distribution" and the same thing occurred.
>
>
> d:/Rtools/mingw_64/bin/ar -rucs ../SuiteSparse_config.a
> SuiteSparse_config.o
> D:\Rtools\mingw_64\bin\nm.exe: 'sublibs': No such file
> d:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Matrix.dll tmp.def
> CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o
> cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o
> dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o
> dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o
> abIndex.o -LD:/erinm/R-3.5.1/bin/x64 -lRlapack -LD:/erinm/R-3.5.1/bin/x64
> -lRblas -LD:/erinm/R-3.5.1/extsoft/lib/x64 -LD:/erinm/R-3.5.1/extsoft/lib
> -LD:/erinm/R-3.5.1/bin/x64 -lR
> CHMfactor.o:CHMfactor.c:(.text+0x3b): undefined reference to
> `cholmod_copy_factor'
> CHMfactor.o:CHMfactor.c:(.text+0x7b): undefined reference to
> `cholmod_change_factor'
> CHMfactor.o:CHMfactor.c:(.text+0x92): undefined reference to
> `cholmod_factor_to_sparse'
> CHMfactor.o:CHMfactor.c:(.text+0xa5): undefined reference to
> `cholmod_free_factor'
> CHMfactor.o:CHMfactor.c:(.text+0x18e): undefined reference to
> `cholmod_solve'
> CHMfactor.o:CHMfactor.c:(.text+0x267): undefined reference to
> `cholmod_copy_factor'
> CHMfactor.o:CHMfactor.c:(.text+0x27e): undefined reference to
> `cholmod_updown'
> CHMfactor.o:CHMfactor.c:(.text+0x396): undefined reference to
> `cholmod_spsolve'
> CHMfactor.o:CHMfactor.c:(.text+0x620): undefined reference to
> `cholmod_factorize_p'
> CHMfactor.o:CHMfactor.c:(.text+0x658): undefined reference to
> `cholmod_change_factor'
> CHMfactor.o:CHMfactor.c:(.text+0x720): undefined reference to
> `cholmod_copy_factor'
> CHMfactor.o:CHMfactor.c:(.text+0x87b): undefined reference to
> `cholmod_copy_factor'
> CHMfactor.o:CHMfactor.c:(.text+0x8c3): undefined reference to
> `cholmod_free_factor'
> Csparse.o:Csparse.c:(.text+0x9f1): undefined reference to
> `cholmod_sparse_to_dense'
> Csparse.o:Csparse.c:(.text+0xcd6): undefined reference to `cholmod_speye'
> Csparse.o:Csparse.c:(.text+0xd21): undefined reference to `cholmod_add'
> Csparse.o:Csparse.c:(.text+0xd31): undefined reference to
> `cholmod_free_sparse'
> Csparse.o:Csparse.c:(.text+0xd3d): undefined reference to
> `cholmod_copy_sparse'
> Csparse.o:Csparse.c:(.text+0xd4c): undefined reference to
> `cholmod_free_sparse'
> Csparse.o:Csparse.c:(.text+0xdf9): undefined reference to `cholmod_copy'
>
> Does this look familiar, please?
>
> Thanks,
> Erin
>
> Erin Hodgess, PhD
> mailto: erinm.hodgess using gmail.com
>
>
> On Fri, Sep 14, 2018 at 1:13 PM Avraham Adler <avraham.adler using gmail.com>
> wrote:
>
>> Try following the directions here. They have worked for me for years.
>> Please see the comments too.
>>
>> https://www.avrahamadler.com/r-tips/build-openblas-for-windows-r64/
>>
>> Hope that helps,
>>
>> Avi
>>
>> On Fri, Sep 14, 2018 at 2:34 PM Erin Hodgess <erinm.hodgess using gmail.com>
>> wrote:
>>
>>> Hello!
>>>
>>> I'm building a package that needs Openblas for matrix manipulation speed
>>> up.
>>>
>>> I built Openblas on Windows 10.  I updated the MkRules.local,
>>> src/extra/blas/Makefile.win, etc.  Things are working with "make all".
>>>
>>> However, when I run "make recommended", I have trouble with the Matrix
>>> package build.  The components of the Cholesky all appear as
>>> unreferenced.
>>>
>>> Has anyone else run into this, please?  I'm working with R-3.5.1 source.
>>>
>>> Thanks,
>>> Erin
>>>
>>> Erin Hodgess, PhD
>>> mailto: erinm.hodgess using gmail.com
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> ______________________________________________
>>> R-package-devel using r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>>
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