[R-pkg-devel] Package valgrind problem I can't solve: Direction?

[Merlise Clyde, Ph.D.]

Peter,

I ran into similar problems with using valgrind to check  my package  BAS

From my understanding using valgrind with rhub does not run the same checks as

R -d "valgrind --tool=memcheck --leak-check=full" --vanilla < mypkg-Ex.R


see https://github.com/r-hub/rhub/issues/23
which might explain why it will run without errors there but the CRAN check will flag errors/warnings.  (perhaps someone else can confirm)


best,
Merlise


Merlise A Clyde
Professor & Chair Department of Statistical Science
Duke University
http://stat.duke.edu/~clyde

clyde at duke.edu<mailto:clyde at duke.edu>
919 681 8440




On Nov 5, 2017, at 7:05 PM, Peter Dunn <PDunn2 at usc.edu.au<mailto:PDunn2 at usc.edu.au>> wrote:

“unless I am being really stupid”

Lucky for that caveat. Feeling rather stupid for this late effort.

Thanks so much.  Help greatly appreciated.

P.



On 6/Nov/17, 9:51 am, "Iñaki Úcar" <i.ucar86 at gmail.com<mailto:i.ucar86 at gmail.com>> wrote:

   2017-11-06 0:09 GMT+01:00 Peter Dunn <PDunn2 at usc.edu.au<mailto:PDunn2 at usc.edu.au>>:
Impossible or not… it just happened (unless I am being really stupid, which
is entirely possible, indeed probable). I confirmed again this morning:
After rebuilding (R CMD build) and checking (R CMD check) without any
errors, I used rhub and the command line again:


Running valgrind at the command line, I get this error:

==5097== Conditional jump or move depends on uninitialised value(s)
==5097== at 0x1118F61FB: smallp_ (in
/Users/pdunn2/Library/R/3.4/library/tweedie/libs/tweedie.so)

   What I meant is that, if you run the script in tweedie.Rcheck from the
   command line, Rscript uses your *installed* version of tweedie, not
   the tarball you built with R CMD build. So if you didn't run R CMD
   INSTALL, Rscript is running an old version without any fix, hence the
   disagreement with R CMD check.

   Iñaki



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