[R-pkg-devel] .bib file in vignette not found during R CMD check

[Hadley Wickham]

I wonder if it would be useful for R CMD build to list the files it
ignores? A misspecified .Rbuildignore seems to be reasonable for a
high proportion of weird errors where you have no idea what's going
wrong.

Hadley

On Tue, Feb 28, 2017 at 11:57 AM, Duncan Murdoch
<murdoch.duncan at gmail.com> wrote:
> On 28/02/2017 10:44 AM, Patrick Schratz wrote:
>>
>> When building the vignette using R CMD Build or
>> `devtools::build_vignette()` everything works fine.
>>
>> However, during R CMD check I get the following
>>
>> ** checking running R code from vignettes ...*
>> *   ‘sperrorest-vignette.Rmd’ using ‘UTF-8’ ... OK*
>> * NONE*
>> ** checking re-building of vignette outputs ... WARNING*
>> *Error in re-building vignettes:*
>> *  ...*
>> *pandoc-citeproc: Could not find Biblio.bib*
>> *CallStack (from HasCallStack):*
>> *  error, called at src/Text/CSL/Pandoc.hs:224:39 in
>> pandoc-citeproc-0.10.4.1-EdjBizYp62fCPHef3CymGR:Text.CSL.Pandoc*
>> *pandoc: Error running filter /usr/local/bin/pandoc-citeproc*
>> *Filter returned error status 1*
>> *Error: processing vignette 'sperrorest-vignette.Rmd' failed with
>> diagnostics:*
>> *pandoc document conversion failed with error 83*
>> *Execution halted*
>>
>> The .bib file is lying in `/vignettes`. There is a similar question on SO
>>
>> <http://stackoverflow.com/questions/41126556/any-way-of-attaching-csl-bib-files-by-using-knitcitations-package>
>> but
>> the answer does not address the problem.
>> When using full paths everything is fine. However, I cannot use full paths
>> when submitting to CRAN.
>>
>> If you want to check on your own, please use the `dev` branch;
>> https://github.com/pat-s/sperrorest/tree/dev
>>
>> pandoc-citeproc: stable 0.10.4.1 (bottled), HEAD
>> pandoc: stable 1.19.2.1 (bottled), HEAD
>
>
> Your .Rbuildignore file says not to include Biblio.bib.  Don't do that.
>
> Duncan Murdoch
>
>
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