[R] Error in if (fraction <= 1) { : missing value where TRUE/FALSE needed
javed khan
j@vedbtk111 @end|ng |rom gm@||@com
Wed Jan 26 15:44:34 CET 2022
Hi Pikal, why would I hide something? I provided just a code where error
is.
Full code is:
index= sample(1:nrow(data), 0.7*nrow(data))
train= data[index,]
test= data[-index,]
task = TaskClassif$new("data", backend = train, target = "isKilled")
learner= lrn("classif.gbm", predict_type = "prob")
model= learner$train(task )
explainer = explain_mlr3(model,
data = test[,-15],
y = as.numeric(test$isKilled)-1,
label="GBM")
prot <- ifelse(test$operator == 'T13', 1, 0)
privileged <- '1'
fc= fairness_check(explainer,
protected = prot,
privileged = privileged)
plot(fc)
And my data is the following:
str(test)
'data.frame': 146 obs. of 15 variables:
$ DepthTree : num 1 1 1 1 1 1 1 1 1 1 ...
$ NumSubclass : num 0 0 0 0 0 0 0 0 0 0 ...
$ McCabe : num 1 3 3 3 3 3 3 1 1 2 ...
$ LOC : num 3 10 10 10 10 10 10 4 4 5 ...
$ DepthNested : num 1 2 2 2 2 2 2 1 1 2 ...
$ CA : num 1 1 1 1 1 1 1 1 1 1 ...
$ CE : num 2 2 2 2 2 2 2 2 2 2 ...
$ Instability : num 0.667 0.667 0.667 0.667 0.667 0.667 0.667 0.667
0.667 0.667 ...
$ numCovered : num 0 0 0 0 0 0 0 0 0 0 ...
$ operator : Factor w/ 16 levels "T0","T1","T2",..: 4 4 7 8 8 8 11 4
10 7 ...
$ methodReturn : Factor w/ 22 levels "I","V","Z","method",..: 2 2 2 2 2 2
2 4 4 2 ...
$ numTestsCover: num 16 15 15 16 15 15 15 4 4 16 ...
$ mutantAssert : num 55 55 55 55 55 55 55 13 13 55 ...
$ classAssert : num 3 3 3 3 3 3 3 3 3 3 ...
$ isKilled : Factor w/ 2 levels "yes","no": 2 2 2 2 2 2 2 2 2 2 ...
> dput(test)
structure(list(DepthTree = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 2, 2, 1, 2, 1, 1, 1), NumSubclass = c(0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2), McCabe = c(1, 3, 3,
3, 3, 3, 3, 1, 1, 2, 3, 3, 3, 3, 3, 3, 3, 3, 2, 2, 1, 1, 1, 2,
2, 2, 1, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 5, 5, 5, 5, 5, 5, 3, 3,
3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 5, 5, 5, 5, 5, 5, 5, 5, 2, 2, 2,
2, 5, 5, 5, 5, 5, 5, 1, 5, 5, 5, 5, 5, 5, 5, 5, 5, 2, 3, 3, 3,
3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1,
2, 2, 1, 1, 1, 2, 2, 2, 2, 1, 1, 1, 1, 1, 4, 1, 1, 1, 1, 2, 2,
2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1), LOC = c(3,
10, 10, 10, 10, 10, 10, 4, 4, 5, 22, 22, 22, 22, 22, 22, 22,
22, 3, 3, 3, 3, 3, 8, 8, 8, 4, 23, 23, 23, 23, 23, 23, 23, 23,
23, 23, 16, 16, 16, 16, 16, 16, 8, 8, 8, 8, 8, 8, 16, 16, 16,
16, 16, 16, 20, 20, 20, 20, 20, 20, 20, 20, 7, 7, 7, 7, 18, 18,
18, 18, 18, 18, 3, 15, 15, 15, 15, 15, 15, 15, 15, 15, 6, 15,
15, 15, 15, 15, 15, 15, 15, 15, 9, 9, 9, 9, 9, 9, 4, 4, 3, 3,
3, 3, 3, 4, 4, 6, 6, 5, 5, 5, 8, 8, 8, 3, 3, 3, 3, 3, 3, 7, 3,
3, 3, 3, 15, 15, 15, 15, 15, 15, 15, 15, 3, 3, 3, 3, 4, 4, 8,
4, 4, 4, 3), DepthNested = c(1, 2, 2, 2, 2, 2, 2, 1, 1, 2, 4,
4, 4, 4, 4, 4, 4, 4, 1, 1, 1, 1, 1, 2, 2, 2, 1, 3, 3, 3, 3, 3,
3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 1,
3, 3, 3, 3, 3, 3, 3, 3, 3, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2,
1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 3, 3, 3, 3, 3, 3, 3, 3, 1, 1,
1, 1, 1, 1, 2, 1, 1, 1, 1), CA = c(1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
1, 1, 1, 1, 1, 1, 2, 1, 2, 2, 1), CE = c(2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 2, 2, 2, 2, 2, 2, 0, 2, 0, 0, 2), Instability = c(0.667,
0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667,
0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667,
0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667,
0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667,
0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667,
0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0.667, 0.667, 0.667, 0.667, 0.667,
0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667,
0.667, 0.667, 0.667, 0.667, 0.667, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0.667, 0.667, 0.667, 0.667, 0.667, 0.667, 0, 0.667, 0, 0,
0.667), numCovered = c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
150, 54, 54, 123, 54, 54, 123, 54, 189, 189, 189, 138, 33, 18,
27, 27, 18, 27, 15, 54, 54, 150, 150, 54, 150, 150, 54, 150,
66, 60, 12, 60, 15, 45, 72, 12, 12, 45, 255, 255, 255, 255, 129,
129, 0, 0, 6, 6, 6, 6, 303, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 15, 21, 12, 12, 12, 12, 12, 12, 12, 12,
48, 1557, 9, 12, 0, 0, 141, 0, 21, 21, 21), operator = structure(c(4L,
4L, 7L, 8L, 8L, 8L, 11L, 4L, 10L, 7L, 4L, 7L, 8L, 8L, 8L, 9L,
9L, 11L, 7L, 8L, 2L, 8L, 8L, 7L, 8L, 10L, 11L, 1L, 2L, 2L, 4L,
8L, 8L, 8L, 8L, 10L, 12L, 4L, 6L, 6L, 8L, 8L, 8L, 7L, 7L, 8L,
8L, 9L, 9L, 1L, 4L, 6L, 8L, 8L, 8L, 1L, 1L, 7L, 7L, 7L, 8L, 8L,
13L, 7L, 8L, 9L, 9L, 1L, 1L, 2L, 7L, 8L, 10L, 10L, 4L, 7L, 7L,
7L, 8L, 8L, 8L, 9L, 9L, 10L, 1L, 8L, 8L, 8L, 8L, 10L, 11L, 11L,
11L, 6L, 7L, 8L, 9L, 9L, 10L, 6L, 10L, 1L, 4L, 7L, 10L, 6L, 7L,
13L, 7L, 13L, 7L, 8L, 9L, 4L, 6L, 9L, 8L, 10L, 8L, 10L, 8L, 10L,
9L, 8L, 10L, 13L, 10L, 2L, 7L, 7L, 8L, 8L, 9L, 11L, 11L, 10L,
10L, 13L, 13L, 8L, 8L, 9L, 4L, 6L, 10L, 10L), .Label = c("T0",
"T1", "T2", "T3", "T4", "T5", "T6", "T7", "T8", "T9", "T10",
"T11", "T12", "T13", "T14", "T15"), class = "factor"), methodReturn =
structure(c(2L,
2L, 2L, 2L, 2L, 2L, 2L, 4L, 4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L,
4L, 4L, 4L, 4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
4L, 4L, 4L, 4L, 4L, 4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 1L, 1L, 1L, 1L,
3L, 3L, 1L, 1L, 3L, 3L, 3L, 3L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 2L, 4L, 4L, 4L,
4L, 4L, 4L, 4L, 4L, 4L, 3L, 3L, 2L, 2L, 4L, 4L, 1L, 3L, 1L, 1L,
4L), .Label = c("I", "V", "Z", "method", "D", "[D", "[[D", "J",
"[I", "C", "[J", "[C", "[S", "F", "[F", "[B", "S", "B", "[Z",
"[[S", "[[B", "[[Z"), class = "factor"), numTestsCover = c(16,
15, 15, 16, 15, 15, 15, 4, 4, 16, 16, 16, 15, 15, 15, 16, 16,
15, 3, 3, 2, 2, 2, 16, 11, 16, 4, 16, 16, 3, 16, 16, 4, 16, 16,
16, 16, 2, 3, 2, 1, 4, 1, 16, 15, 16, 15, 16, 16, 2, 2, 2, 3,
2, 2, 4, 5, 5, 4, 5, 5, 4, 5, 4, 4, 4, 4, 4, 3, 4, 4, 3, 4, 4,
5, 5, 4, 4, 5, 4, 4, 5, 4, 4, 4, 3, 4, 4, 4, 4, 3, 3, 4, 4, 4,
4, 4, 6, 6, 0, 0, 2, 2, 2, 2, 7, 17, 17, 15, 15, 15, 15, 15,
16, 16, 16, 16, 15, 16, 16, 15, 17, 17, 16, 16, 5, 4, 4, 4, 4,
4, 4, 4, 4, 4, 16, 16, 3, 4, 0, 0, 5, 0, 4, 4, 1), mutantAssert = c(55,
55, 55, 55, 55, 55, 55, 13, 13, 55, 55, 55, 55, 55, 55, 55, 55,
55, 9, 9, 9, 9, 9, 55, 41, 55, 13, 55, 55, 5, 55, 55, 13, 55,
55, 55, 55, 8, 13, 8, 4, 13, 4, 55, 55, 55, 55, 55, 55, 9, 9,
9, 9, 9, 8, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 6, 9, 9, 6,
9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 6, 9, 9, 9, 9, 6, 6, 9,
9, 9, 9, 9, 14, 14, 0, 0, 2, 2, 2, 2, 15, 58, 58, 55, 55, 55,
55, 55, 58, 58, 58, 55, 55, 55, 55, 55, 58, 58, 58, 58, 9, 9,
6, 6, 6, 6, 6, 6, 6, 6, 55, 55, 5, 13, 0, 0, 11, 0, 9, 9, 8),
classAssert = c(3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
3, 3, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
10, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 0, 0, 0, 0, 1, 1, 3, 0,
3, 3, 0), isKilled = structure(c(2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L,
1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L,
1L, 2L, 1L, 1L, 1L), .Label = c("yes", "no"), class = "factor")),
row.names = c(3L,
9L, 12L, 13L, 14L, 15L, 19L, 21L, 22L, 24L, 28L, 29L, 39L, 44L,
46L, 51L, 52L, 57L, 62L, 63L, 68L, 71L, 73L, 75L, 77L, 80L, 83L,
84L, 85L, 86L, 90L, 95L, 100L, 102L, 103L, 108L, 112L, 120L,
122L, 123L, 142L, 143L, 146L, 158L, 159L, 160L, 163L, 167L, 168L,
170L, 174L, 176L, 183L, 186L, 192L, 196L, 199L, 203L, 205L, 206L,
208L, 214L, 221L, 226L, 229L, 233L, 234L, 235L, 236L, 237L, 238L,
249L, 252L, 255L, 260L, 267L, 270L, 271L, 273L, 275L, 276L, 277L,
278L, 286L, 288L, 293L, 295L, 297L, 298L, 300L, 301L, 302L, 306L,
312L, 313L, 316L, 317L, 331L, 333L, 338L, 341L, 342L, 344L, 346L,
348L, 359L, 370L, 375L, 378L, 381L, 382L, 383L, 386L, 389L, 390L,
394L, 397L, 400L, 402L, 403L, 404L, 408L, 415L, 418L, 419L, 423L,
425L, 426L, 429L, 431L, 432L, 433L, 444L, 446L, 447L, 448L, 449L,
451L, 452L, 457L, 458L, 470L, 474L, 476L, 479L, 484L), class = "data.frame")
On Wed, Jan 26, 2022 at 3:29 PM PIKAL Petr <petr.pikal using precheza.cz> wrote:
> Hi
>
> It seems that you are hiding what you really do.
>
> This
> > options(error = NULL)
> works fine without any error. So please If you want some reasonable answer
> post question with data and code which is causing the error.
>
> My wild guess is that you have some objects in your environment and you do
> not know that they are used in you commands. Try to start fresh R session
> and try to inspect your environment with
>
> ls()
>
> Cheers
> Petr
>
> > -----Original Message-----
> > From: R-help <r-help-bounces using r-project.org> On Behalf Of javed khan
> > Sent: Wednesday, January 26, 2022 3:05 PM
> > To: Ivan Krylov <krylov.r00t using gmail.com>
> > Cc: R-help <r-help using r-project.org>
> > Subject: Re: [R] Error in if (fraction <= 1) { : missing value where
> TRUE/FALSE
> > needed
> >
> > Ivan, thanks
> >
> > When I use options(error = NULL)
> >
> > it says: Error during wrapup: missing value where TRUE/FALSE needed
> > Error: no more error handlers available (recursive errors?); invoking
> 'abort'
> > restart
> >
> > With traceback(), I get
> >
> > 4: readable_number(max_value - min_value, FALSE)
> > 3: get_nice_ticks(lower_bound, upper_bound)
> >
> > On Wed, Jan 26, 2022 at 2:53 PM Ivan Krylov <krylov.r00t using gmail.com>
> wrote:
> >
> > > On Wed, 26 Jan 2022 14:47:16 +0100
> > > javed khan <javedbtk111 using gmail.com> wrote:
> > >
> > > > Error in if (fraction <= 1) { : missing value where TRUE/FALSE
> > > > needed
> > >
> > > > var <- ifelse(test$operator == 'T14', 1, 0)
> > >
> > > The error must be in a place different from your test$operator
> > > comparison. Have you tried traceback() to get the call stack leading
> > > to the error? Or options(error = recover) to land in a debugger
> > > session the moment an uncaught error happens? (Use options(error =
> > > NULL) to go back to the default behaviour.)
> > >
> > > Unrelated: var <- test$operator == 'T14' will also give you an
> > > equivalent logical vector with a bit less work.
> > >
> > > --
> > > Best regards,
> > > Ivan
> > >
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
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