[R] RSQLite slowness

Martin Morgan mtmorg@n@b|oc @end|ng |rom gm@||@com
Wed Oct 6 21:02:12 CEST 2021

https://support.bioconductor.org and the community slack (sign up at https://bioc-community.herokuapp.com/ ) as well as the general site https://bioconductor.org . Actually your question sounds like a SQLite question � JOIN a table, versus parameterized query. One could perhaps construct the relevant example at the sqlite command line?

Martin Morgan

On 10/6/21, 2:50 PM, "R-help" <r-help-bounces using r-project.org> wrote:
Thank you Bert, I set up a new thread on
BioStars [1].  So far, I'm a bit
unfamilliar with Bioconductor (but will
hopefully attend a course about it in
November, which I'm kinda hyped about),
other than installing and updating R
packages using BiocManager ....  Did you
think of something else than
BioStars.org when saying �Bioconductor?�

The question could be viewed as gene
related, but I think it is really about
how can one easier than with sqlite
handle large tsv files, and why is that
parser thing so slow ...  I think this
is more like a core R thing than gene
related question ...

[1] https://www.biostars.org/p/9492486/

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