[R] about a p-value < 2.2e-16

[Peter Langfelder]

I thinnk the answer is much simpler. The print method for hypothesis
tests (class htest) truncates the p-values. In the above example,
instead of using

wilcox.test(rnorm(100), rnorm(100, 2), exact=TRUE)

and copying the output, just print the p-value:

tst = wilcox.test(rnorm(100), rnorm(100, 2), exact=TRUE)
tst$p.value

[1] 2.988368e-32


I think this value is what the journal asks for.

HTH,

Peter

On Thu, Mar 18, 2021 at 10:05 PM Spencer Graves
<spencer.graves using effectivedefense.org> wrote:
>
>        I would push back on that from two perspectives:
>
>
>              1.  I would study exactly what the journal said very
> carefully.  If they mandated "wilcox.test", that function has an
> argument called "exact".  If that's what they are asking, then using
> that argument gives the exact p-value, e.g.:
>
>
>  > wilcox.test(rnorm(100), rnorm(100, 2), exact=TRUE)
>
>          Wilcoxon rank sum exact test
>
> data:  rnorm(100) and rnorm(100, 2)
> W = 691, p-value < 2.2e-16
>
>
>              2.  If that's NOT what they are asking, then I'm not
> convinced what they are asking makes sense:  There is is no such thing
> as an "exact p value" except to the extent that certain assumptions
> hold, and all models are wrong (but some are useful), as George Box
> famously said years ago.[1]  Truth only exists in mathematics, and
> that's because it's a fiction to start with ;-)
>
>
>        Hope this helps.
>        Spencer Graves
>
>
> [1]
> https://en.wikipedia.org/wiki/All_models_are_wrong
>
>
> On 2021-3-18 11:12 PM, Bogdan Tanasa wrote:
> >   <https://meta.stackexchange.com/questions/362285/about-a-p-value-2-2e-16>
> > Dear all,
> >
> > i would appreciate having your advice on the following please :
> >
> > in R, the wilcox.test() provides "a p-value < 2.2e-16", when we compare
> > sets of 1000 genes expression (in the genomics field).
> >
> > however, the journal asks us to provide the exact p value ...
> >
> > would it be legitimate to write : "p-value = 0" ? thanks a lot,
> >
> > -- bogdan
> >
> >       [[alternative HTML version deleted]]
> >
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