[R] Help with R-Markdown please
Poling, William
Po||ngW @end|ng |rom @etn@@com
Wed May 13 20:46:30 CEST 2020
Hello all.
I am still struggling with this issue.
It appears that new installations are going to local drive.
# #Test 05/13/2020
# install.packages("abjutils")
# package ‘abjutils’ successfully unpacked and MD5 sums checked
#
# The downloaded binary packages are in
# C:\Users\A436798\AppData\Local\Temp\RtmpCuXNJn\downloaded_packages
However, when I run .libPaths() it indicates our UNC path
[1] "\\\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-4.0.0patched/library"
Is there a way for me to change this myself in my instance of R?
Thank you.
WHP
Proprietary
-----Original Message-----
From: Ege Rubak <rubak using math.aau.dk>
Sent: Tuesday, May 12, 2020 7:43 AM
To: Poling, William <PolingW using aetna.com>; r-help using r-project.org
Subject: [EXTERNAL] Re: [R] Help with R-Markdown please
**** External Email - Use Caution ****
Looks like your files are on a Windows network drive (UNC path). I have experienced many problems with this on a Windows laptop from work. If at all possible you should avoid this. As an absolute minimum make sure your R library (collection of installed packages) is on the local file system and not a UNC path. If you are lucky this could be enough to make things work.
You can check your library location(s) with the command .libPaths() in an R session.
Good luck.
Ege
On Tue, 2020-05-12 at 10:15 +0000, Poling, William via R-help wrote:
> #UPDATED 05/05/2020
> #RStudio Version Version 1.2.1335 need this one--> 1.2.5019
> sessionInfo()
> # R version 4.0.0 Patched (2020-05-03 r78349)
> #Platform: x86_64-w64-mingw32/x64 (64-bit) #Running under: Windows 10
> x64 (build 17763)
>
> Good morning.
>
> This is the first time I have tried RMarkdown on new laptop with new
> employer.
> I am not sure how to go about fixing this problem below?
>
> Would someone please advise course of action.
>
> Thank you.
>
> WHP
>
>
>
> processing file: Member-Geo-Location-Test-V1.Rmd
>
> |..........
> | 14%
> ordinary text without R code
>
>
> |....................
> | 29%
> label: unnamed-chunk-1 (with options) List of 1 $ echo: logi FALSE
>
>
> |..............................
> | 43%
> ordinary text without R code
>
>
> |........................................
> | 57%
> label: setup (with options)
> List of 2
> $ include: logi FALSE
> $ warning: logi FALSE
>
>
> |..................................................
> | 71%
> ordinary text without R code
>
>
> |............................................................
> | 86%
> label: Table1 (with options)
> List of 2
> $ echo : logi FALSE
> $ results: chr "asis"
>
>
> |....................................................................
> ..| 100%
> inline R code fragments
>
>
> output file: Member-Geo-Location-Test-V1.knit.md
>
> "C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS Member-
> Geo-Location-Test-V1.utf8.md --to html4 --from
> markdown+autolink_bare_uris+tex_math_single_backslash+smart --output
> Member-Geo-Location-Test-V1.html --email-obfuscation none --self-
> contained --standalone --section-divs --template "\\winp-oaf-
> 113\FldrRedir_1$\A436798\Data\R\R-
> 4.0.0patched\library\rmarkdown\rmd\h\default.html" --no-highlight --
> variable highlightjs=1 --variable "theme:bootstrap" --include-in-
> header "C:\Users\A436798\AppData\Local\Temp\RtmpSajZla\rmarkdown-
> str2ae846253313.html" --mathjax --variable "mathjax-url:
> https://urldefense.proofpoint.com/v2/url?u=https-3A__mathjax.rstudio.c
> om_latest_MathJax.js-3Fconfig-3DTeX-2DAMS-2DMML-5FHTMLorMML&d=DwIGaQ&c
> =wluqKIiwffOpZ6k5sqMWMBOn0vyYnlulRJmmvOXCFpM&r=j7MrcIQm2xjHa8v-2mTpmTC
> tKvneM2ExlYvnUWbsByY&m=uBce0mQRO8wdLXO8BDTtjk4R92KVzpjtkQ-NqYiAHCo&s=S
> MNU_B--j9FvBKh-0u1NG5RHd7AtLkvyVsi9ybyUwYU&e=
> " --lua-filter "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-
> 4.0.0patched/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter
> "\\winp-oaf-113/FldrRedir_1$/A436798/Data/R/R-
> 4.0.0patched/library/rmarkdown/rmd/lua/latex-div.lua"
> Could not fetch http://?/UNC/winp-oaf-
> 113/FldrRedir_1$/A436798/Data/R/R-
> 4.0.0patched/library/rmarkdown/rmd/h/default.html
> HttpExceptionRequest Request {
> host = ""
> port = 80
> secure = False
> requestHeaders = []
> path = "/"
> queryString = "?/UNC/winp-oaf-
> 113/FldrRedir_1$/A436798/Data/R/R-
> 4.0.0patched/library/rmarkdown/rmd/h/default.html"
> method = "GET"
> proxy = Nothing
> rawBody = False
> redirectCount = 10
> responseTimeout = ResponseTimeoutDefault
> requestVersion = HTTP/1.1
> }
> (InvalidDestinationHost "")
> Error: pandoc document conversion failed with error 61 Execution
> halted
>
> WHP
>
>
> Proprietary
>
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> con...{{dropped:16}}
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--
Ege Rubak, Associate Professor,
Department of Mathematical Sciences, Aalborg University Skjernvej 4A, 9220 Aalborg East, Denmark
Phone: (+45)99408861
Mobile: (+45)30230252
Email: rubak using math.aau.dk
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Thank you. Aetna
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