[R] Error in Rose Method (class balancing)

[Jeff Newmiller]

All you did was include the dput command in your example. We need the output of dput, not the command itself.

On July 23, 2020 2:43:31 PM PDT, Neha gupta <neha.bologna90 using gmail.com> wrote:
>David, I understand that the file will not be in your directory but I
>have
>provided the data using dput? Didn't I? Previously members of this
>group
>have used dput to provide the detail about their data. Seriously, I
>have no
>idea how else I can provide a reproducible example.
>
>
>
><https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=icon>
>Virus-free.
>www.avast.com
><https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=link>
><#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
>
>On Thu, Jul 23, 2020 at 10:47 PM David Winsemius
><dwinsemius using comcast.net>
>wrote:
>
>>
>> On 7/23/20 9:34 AM, Neha gupta wrote:
>>
>>
>> Hello David, file not found should be the path problem I guess. I
>just
>> forgot the pROC library, which I included here. These are all the
>libraries
>> I am using.
>>
>> library(caret)
>> library(farff)
>> library(DMwR)
>> library(pROC)
>> library(pls)
>>
>> setwd("C:/Users/PC/Documents")
>> d=readARFF("bughunter.arff")
>>
>>
>> I suppose *you* might have such a file in that directory, but do you
>> assume that *we* will????
>>
>> A reproducible example will allow others to run your code. Seems
>fairly
>> clear that we are not there yet.
>>
>> --
>>
>> David.
>>
>> dput( head( d, 30 ) )
>>
>> index <- createDataPartition(d$`Bug class`, p = .70,list = FALSE)
>>
>> tr <- d[index, ]
>>
>> ts <- d[-index, ]
>>
>> boot3 <- trainControl(method = "repeatedcv", number=10,
>> repeats=10,classProbs = TRUE,verboseIter = FALSE,
>>
>> summaryFunction = twoClassSummary, sampling = "rose")
>>
>> set.seed(30218)
>>
>> ct <- train(`Bug class` ~ ., data = tr, method = "pls", metric =
>"AUC", preProc
>> = c("center", "scale", "nzv"), trControl = boot3)
>>
>> getTrainPerf(ct)
>>
>>
>>
>>
><https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=icon>
>Virus-free.
>> www.avast.com
>>
><https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=link>
>>
>> On Thu, Jul 23, 2020 at 4:01 PM Neha gupta <neha.bologna90 using gmail.com>
>> wrote:
>>
>>>
>>> Hello David, thanks for your reply. I have added the information.
>>>
>>> library(caret)
>>> library(farff)
>>> library(DMwR)
>>>
>>> d=readARFF("bughunter.arff")
>>> dput( head( d, 30 ) )
>>>
>>> index <- createDataPartition(d$`Bug class`, p = .70,list = FALSE)
>>>
>>> tr <- d[index, ]
>>>
>>> ts <- d[-index, ]
>>>
>>> boot3 <- trainControl(method = "repeatedcv", number=10,
>>> repeats=10,classProbs = TRUE,verboseIter = FALSE,
>>>
>>> summaryFunction = twoClassSummary, sampling = "rose")
>>>
>>> set.seed(30218)
>>>
>>> ct <- train(`Bug class` ~ ., data = tr, method = "pls", metric =
>"AUC", preProc
>>> = c("center", "scale", "nzv"), trControl = boot3)
>>>
>>> getTrainPerf(ct)
>>>
>>> On Thu, Jul 23, 2020 at 1:08 AM David Winsemius
><dwinsemius using comcast.net>
>>> wrote:
>>>
>>>>
>>>> On 7/22/20 3:43 PM, Neha gupta wrote:
>>>> > Hello,
>>>> >
>>>> >
>>>> > I get the following error when I use the ROSE class balancing
>method
>>>> but
>>>> > when I use other methods like SMOTE, up, down, I do not get any
>error
>>>> > message.
>>>> >
>>>> >
>>>> > Something is wrong; all the ROC metric values are missing:
>>>> >
>>>> > ROC Sens Spec
>>>> >
>>>> > Min. : NA Min. : NA Min. : NA
>>>> >
>>>> > 1st Qu.: NA 1st Qu.: NA 1st Qu.: NA
>>>> >
>>>> > Median : NA Median : NA Median : NA
>>>> >
>>>> > Mean :NaN Mean :NaN Mean :NaN
>>>> >
>>>> > 3rd Qu.: NA 3rd Qu.: NA 3rd Qu.: NA
>>>> >
>>>> > Max. : NA Max. : NA Max. : NA
>>>> >
>>>> >
>>>> >
>>>> > library(DMwR)
>>>> >
>>>> > d=readARFF("bughunter.arff")
>>>>
>>>> After installing that package and loading pkg:DMwR I get:
>>>>
>>>>
>>>> Error in readARFF("bughunter.arff") : could not find function
>"readARFF"
>>>>
>>>>
>>>> Since you also posted in HTML, I suggest you read the Posting
>Guide,
>>>> restart and R session and post a reproducible example that loads
>all
>>>> needed packages and data.
>>>>
>>>> --
>>>>
>>>> David.
>>>>
>>>> >
>>>> > index <- createDataPartition(d$`Bug class`, p = .70,list = FALSE)
>>>> >
>>>> > tr <- d[index, ]
>>>> >
>>>> > ts <- d[-index, ]
>>>> >
>>>> > boot3 <- trainControl(method = "repeatedcv", number=10,
>>>> > repeats=10,classProbs = TRUE,verboseIter = FALSE,
>>>> >
>>>> > summaryFunction = twoClassSummary, sampling = "rose")
>>>> >
>>>> > set.seed(30218)
>>>> >
>>>> > ct <- train(`Bug class` ~ ., data = tr,
>>>> >
>>>> > method = "pls",
>>>> >
>>>> > metric = "AUC",
>>>> >
>>>> > preProc = c("center", "scale", "nzv"),
>>>> >
>>>> > trControl = boot3)
>>>> >
>>>> > getTrainPerf(ct)
>>>> >
>>>> >       [[alternative HTML version deleted]]
>>>> >
>>>> > ______________________________________________
>>>> > R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>>> > https://stat.ethz.ch/mailman/listinfo/r-help
>>>> > PLEASE do read the posting guide
>>>> http://www.R-project.org/posting-guide.html
>>>> > and provide commented, minimal, self-contained, reproducible
>code.
>>>>
>>>
>
>	[[alternative HTML version deleted]]
>
>______________________________________________
>R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

-- 
Sent from my phone. Please excuse my brevity.