@@r@h@go@|ee @end|ng |rom gm@||@com
Mon Sep 9 20:03:15 CEST 2019
You can use the vector of integer cluster numbers with silhouette()
from the cluster package.
But note that silhouette as an assessment metric makes roughly the
same assumptions that k-means does about the data structure, and may
not return useful results with other clustering methods.
On Mon, Sep 9, 2019 at 12:01 PM Nicola Fiedler <nicolafiedler using gmx.de> wrote:
> Hi together,
> I’m new using R and have a question concerning the Silhouette coefficient. I’ve clustered very easy objects with Affinity Propagation.
> My data just has one numeric attribute.
> apres <- apcluster(negDistMat(r=2), data, details=TRUE)
> This worked very well. To compare with other algorithms I want to know the Silhouette coefficient.
> The function I use for the other algorithms doesn’t work for AP (clvalid or fviz_nbclust).
> So my question is, how I can get the Silhouette coefficient for the clustering with AP?
> Thank you very much in advance for your help.
Sarah Goslee (she/her)
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