[R] BiocManager problem.

[Ali Siavosh]

All good.
Thanks 

> On Oct 10, 2019, at 1:08 PM, Martin Morgan <mtmorgan.bioc using gmail.com> wrote:
> 
> Please follow the response to your question on the Bioconductor support site
> 
> https://support.bioconductor.org/p/125493/
> 
> Martin Morgan
> 
> On 10/10/19, 12:23 PM, "R-help on behalf of Ali Siavosh" <r-help-bounces using r-project.org on behalf of ali.siavosh using gmail.com> wrote:
> 
>    Hi,
>    I have installation of R in a server running on redhat 7. I have upgraded R and now to upgrade BiocManager I get error messages as below:
> 
>> install.packages("BiocManager")
>    Installing package into ‘/usr/lib64/R/library’
>    (as ‘lib’ is unspecified)
>    trying URL 'https://cran.revolutionanalytics.com/src/contrib/BiocManager_1.30.7.tar.gz'
>    Content type 'application/octet-stream' length 38020 bytes (37 KB)
>    ==================================================
>    downloaded 37 KB
> 
>    * installing *source* package ‘BiocManager’ ...
>    ** package ‘BiocManager’ successfully unpacked and MD5 sums checked
>    ** using staged installation
>    ** R
>    ** inst
>    ** byte-compile and prepare package for lazy loading
>    ** help
>    *** installing help indices
>      converting help for package ‘BiocManager’
>        finding HTML links ... done
>        BiocManager-pkg                         html  
>        available                               html  
>        install                                 html  
>        repositories                            html  
>        valid                                   html  
>        version                                 html  
>    ** building package indices
>    ** installing vignettes
>    ** testing if installed package can be loaded from temporary location
>    ** testing if installed package can be loaded from final location
>    ** testing if installed package keeps a record of temporary installation path
>    * DONE (BiocManager)
>    Making 'packages.html' ... done
> 
>    The downloaded source packages are in
>    	‘/tmp/RtmpgHhwMp/downloaded_packages’
>    Updating HTML index of packages in '.Library'
>    Making 'packages.html' ... done
>> BiocManager::version()
>    Error: .onLoad failed in loadNamespace() for 'BiocManager', details:
>      call: NULL
>      error: Bioconductor version '3.8' requires R version '3.5'; see
>      https://bioconductor.org/install
>> BiocManager::valid()
>    Error: .onLoad failed in loadNamespace() for 'BiocManager', details:
>      call: NULL
>      error: Bioconductor version '3.8' requires R version '3.5'; see
>      https://bioconductor.org/install
>> BiocManager::install(version="3.5")
>    Error: .onLoad failed in loadNamespace() for 'BiocManager', details:
>      call: NULL
>      error: Bioconductor version '3.8' requires R version '3.5'; see
>      https://bioconductor.org/install
>> BiocManager::install(version="3.7")
>    Error: .onLoad failed in loadNamespace() for 'BiocManager', details:
>      call: NULL
>      error: Bioconductor version '3.8' requires R version '3.5'; see
>      https://bioconductor.org/install <https://bioconductor.org/install>
> 
> 
>    I appreciate any help with regard to this.
>    Thank you
> 
> 
>    	[[alternative HTML version deleted]]
> 
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