[R] BiocManager problem.

Martin Morgan mtmorg@n@b|oc @end|ng |rom gm@||@com
Thu Oct 10 19:08:50 CEST 2019


Please follow the response to your question on the Bioconductor support site

https://support.bioconductor.org/p/125493/

Martin Morgan

On 10/10/19, 12:23 PM, "R-help on behalf of Ali Siavosh" <r-help-bounces using r-project.org on behalf of ali.siavosh using gmail.com> wrote:

    Hi,
    I have installation of R in a server running on redhat 7. I have upgraded R and now to upgrade BiocManager I get error messages as below:
    
    > install.packages("BiocManager")
    Installing package into ‘/usr/lib64/R/library’
    (as ‘lib’ is unspecified)
    trying URL 'https://cran.revolutionanalytics.com/src/contrib/BiocManager_1.30.7.tar.gz'
    Content type 'application/octet-stream' length 38020 bytes (37 KB)
    ==================================================
    downloaded 37 KB
    
    * installing *source* package ‘BiocManager’ ...
    ** package ‘BiocManager’ successfully unpacked and MD5 sums checked
    ** using staged installation
    ** R
    ** inst
    ** byte-compile and prepare package for lazy loading
    ** help
    *** installing help indices
      converting help for package ‘BiocManager’
        finding HTML links ... done
        BiocManager-pkg                         html  
        available                               html  
        install                                 html  
        repositories                            html  
        valid                                   html  
        version                                 html  
    ** building package indices
    ** installing vignettes
    ** testing if installed package can be loaded from temporary location
    ** testing if installed package can be loaded from final location
    ** testing if installed package keeps a record of temporary installation path
    * DONE (BiocManager)
    Making 'packages.html' ... done
    
    The downloaded source packages are in
    	‘/tmp/RtmpgHhwMp/downloaded_packages’
    Updating HTML index of packages in '.Library'
    Making 'packages.html' ... done
    > BiocManager::version()
    Error: .onLoad failed in loadNamespace() for 'BiocManager', details:
      call: NULL
      error: Bioconductor version '3.8' requires R version '3.5'; see
      https://bioconductor.org/install
    > BiocManager::valid()
    Error: .onLoad failed in loadNamespace() for 'BiocManager', details:
      call: NULL
      error: Bioconductor version '3.8' requires R version '3.5'; see
      https://bioconductor.org/install
    > BiocManager::install(version="3.5")
    Error: .onLoad failed in loadNamespace() for 'BiocManager', details:
      call: NULL
      error: Bioconductor version '3.8' requires R version '3.5'; see
      https://bioconductor.org/install
    > BiocManager::install(version="3.7")
    Error: .onLoad failed in loadNamespace() for 'BiocManager', details:
      call: NULL
      error: Bioconductor version '3.8' requires R version '3.5'; see
      https://bioconductor.org/install <https://bioconductor.org/install>
    
    
    I appreciate any help with regard to this.
    Thank you
    
    
    	[[alternative HTML version deleted]]
    
    ______________________________________________
    R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
    https://stat.ethz.ch/mailman/listinfo/r-help
    PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
    and provide commented, minimal, self-contained, reproducible code.
    


More information about the R-help mailing list