[R] R jobs on SLURM running on a single node only

Jeff Newmiller jdnewmil at dcn.davis.ca.us
Thu Aug 18 07:36:36 CEST 2016

Cross-posting [1] is not acceptable on R-help, particularly if you don't let reasonable time pass and inform us of the other posting.  Topics not related to the R language are off-topic here (this is about slurm, not R).

[1] http://stackoverflow.com/questions/38991287/r-jobs-on-slurm-running-on-a-single-node-only
Sent from my phone. Please excuse my brevity.

On August 17, 2016 1:29:57 AM PDT, S....v ... <s.. at ...com> wrote:
>Despite mentioning the job name, partition and node on which the job
>run, R is still running on compute node 01 with no migration to other
>nodes. I am presenting the script below, any help is appreciated:
>#SBATCH --job-name=10/0.30
>#SBATCH --nodes=1
>#SBATCH --ntasks-per-node=16
>#SBATCH --partition=debug
>#SBATCH --exclude=compute[23,31-33,40]
>#SBATCH --nodelist=compute[07]
>echo "program started"
>cd /home1/...../coarse_grained_simulations/10/0.30
>sbatch /home1/ASP/R-3.3.1/bin/R CMD BATCH --no-save --no-restore
>On running squeue to get the list of running jobs:
>       12169      nnvi        R      ASP  R       7:08      1 compute01
>       12172      nnvi        R      ASP  R       5:03      1 compute01
>       12175      nnvi        R      ASP  R       3:26      1 compute01
>       12177      nnvi        R      ASP  R       0:02      1 compute01
>	[[alternative HTML version deleted]]
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