[R] R jobs on SLURM running on a single node only
S....v ...
s.........0 at .....
Wed Aug 17 10:29:57 CEST 2016
Despite mentioning the job name, partition and node on which the job should
run, R is still running on compute node 01 with no migration to other
nodes. I am presenting the script below, any help is appreciated:
!/bin/bash
#SBATCH --job-name=10/0.30
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=16
#SBATCH --partition=debug
#SBATCH --exclude=compute[23,31-33,40]
#SBATCH --nodelist=compute[07]
echo "program started"
cd /home1/.../....../coarse_grained_simulations/10/0.30
sbatch /home1/ASP/R-3.3.1/bin/R CMD BATCH --no-save --no-restore test_dcd.R
test_dcd.out
On running squeue to get the list of running jobs:
12169 nnvi R ASP R 7:08 1 compute01
12172 nnvi R ASP R 5:03 1 compute01
12175 nnvi R ASP R 3:26 1 compute01
12177 nnvi R ASP R 0:02 1 compute01
Regards
S....v
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