[R] Problems installing biocLite on Fedora 23

[Knut Hansen]

I'm running Fedora 23 with KDE 5.16. I'm trying to install biocLite using the commands

source("https://bioconductor.org/biocLite.R")
biocLite()

as root.

During installation I get error messages like this:

gcc -m64 -I/usr/include/R -DNDEBUG  -I/usr/local/include -
I"/usr/lib64/R/library/S4Vectors/include" -I"/usr/lib64/R/library/IRanges/include" -
I"/usr/lib64/R/library/XVector/include" -I"/usr/lib64/R/libr
*gcc:* *error: */usr/lib/rpm/redhat/redhat-hardened-cc1: No such file or directory 

(Rsamtools is an example here, I get the same error message for all modules).

It did not help to reinstall gcc.

Any suggestions?


Knut Hansen
University of Tromsø

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