[R] Problems getting Rcmdr running
Weiner, Michael
weinerm at ccf.org
Tue May 12 17:42:46 CEST 2015
I have been asked by a couple researchers to install Rcmdr on our HPC cluster. The cluster is a CentOS 6.5 64-bit linux OS and I am having issues running Rcmdr on 3.2.0 (and other versions, but I fear the problem I am experiencing is affecting all the versions I have installed). I have done a fair bit of googling and ran across a thread (https://stat.ethz.ch/pipermail/r-help/2015-April/427338.html) with a number of good responses from John Fox, and looked over the documentation found at http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html but nothing there was helpful to my situation.
> sessionInfo()
R version 3.2.0 (2015-04-16)
Platform: x86_64-unknown-linux-gnu (64-bit)
Running under: CentOS release 6.5 (Final)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] splines stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] RcmdrMisc_1.0-2 sandwich_2.3-3 car_2.0-25
loaded via a namespace (and not attached):
[1] Rcpp_0.11.5 tcltk2_1.2-11 nloptr_1.0.4
[4] RColorBrewer_1.1-2 plyr_1.8.2 tools_3.2.0
[7] class_7.3-12 rpart_4.1-9 digest_0.6.8
[10] lme4_1.1-7 gtable_0.1.2 nlme_3.1-120
[13] lattice_0.20-31 mgcv_1.8-6 Matrix_1.2-0
[16] parallel_3.2.0 SparseM_1.6 proto_0.3-10
[19] e1071_1.6-4 Rcmdr_2.1-7 stringr_0.6.2
[22] cluster_2.0.1 grid_3.2.0 nnet_7.3-9
[25] tcltk_3.2.0 survival_2.38-1 foreign_0.8-63
[28] latticeExtra_0.6-26 minqa_1.2.4 Formula_1.2-1
[31] ggplot2_1.0.1 reshape2_1.4.1 Hmisc_3.15-0
[34] scales_0.2.4 MASS_7.3-40 abind_1.4-3
[37] pbkrtest_0.4-2 colorspace_1.2-6 quantreg_5.11
[40] acepack_1.3-3.3 munsell_0.4.2 zoo_1.7-12
And here is the somewhat generic error message I get:
> library(Rcmdr)
Loading required package: splines
Loading required package: RcmdrMisc
Loading required package: car
Loading required package: sandwich
Error : .onAttach failed in attachNamespace() for 'Rcmdr', details:
call: structure(.External(.C_dotTcl, ...), class = "tclObj")
error: [tcl] Invalid state name hover.
Error: package or namespace load failed for 'Rcmdr'
As a test, I was able to run the tkProgressBar and get the expected widget. I am at quite a loss here on how to get this running properly. Does anyone have any suggestions on how to proceed? Can I provide any additional information to assist?
Thank you in advance
Michael Weine Think Pink: October is Breast Cancer Awareness Month
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