[R] how to build a heatmap like this
escaping
young_2304 at hotmail.com
Thu Oct 23 03:44:58 CEST 2014
Hi, everyone,
I am a new R user, and was required to build several heatmaps as shown in attached file. To reach it, I need to normalize the RPKM data of exon-level expression to generate Z-score using R. The data looks like
mpleId
geneName
start
end
rpkm
PC10-6
KIF1B
10270764
10270936
4.00059
PC10-6
KIF1B
10292308
10292492
35.3023
PC10-6
KIF1B
10316305
10316381
85.9611
PC10-6
KIF1B
10318551
10318730
64.5961
Exons and introns are required to shown on the heatmap.
Does anyone know how to do it?
Thanks a lot!
Yizi
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