[R] Full Documentation of R analysis
jwiley.psych at gmail.com
Thu Apr 4 16:25:17 CEST 2013
I think that save.image() is the way to go. Regarding the directory,
its possible to pass arguments to an R script from the command line,
or as long as the R script is in the directory you want the image
saved in, just save it to the current working directory.
On Thu, Apr 4, 2013 at 7:18 AM, <will.eagle at gmx.net> wrote:
> Dear all,
> I would like to fully document an analysis in R including script, output and
> workspace data. To do this I currently run under Linux
> $ R CMD BATCH myscript.R
> This command combines and saves only the script commands and the output
> ./myscript.Rout. To save the workspace, I have to explicitly specify the
> path in the R file and apply save.image(...).
> How can I save the full workspace with the same naming scheme under the same
> path, e.g. ./myscript.RData similar to ./myscript.Rout?
> Note: R CMD BATCH myscript.R --save does not work.
> Best regards and thanks in advance,
> R-help at r-project.org mailing list
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
Ph.D. Student, Health Psychology
University of California, Los Angeles
Senior Analyst - Elkhart Group Ltd.
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