[R] hu6800cdf

[Martin Morgan]

Hi Srod --

On 05/16/2012 11:04 PM, srod wrote:
> Hi,
>
> I'm using a command in bioconductor that seems to require a package called
> hu6800cdf. I've installed this properly but I still get the same error:
>
>   Could not find array definition file ' hu6800cdf.qcdef '. Simpleaffy does
> not know the QC parameters for this array type.
> See the package vignette for details about how to specify QC parameters
> manually.

Please ask questions about Bioconductor packages on the Bioconductor 
mailing list,

   http://bioconductor.org/help/mailing-list/

cc'ing the maintainer

   > packageDescription("simpleaffy")$Maintainer

including the output of

   > sessionInfo()

and the precise command that generates the error.

The package vignette

   > vignette(package="simpleaffy", "simpleAffy")

especially section 5.4, Specifying alternate QC configurations, may be 
helpful.

Martin

>
> I've tried specifying the cdfname file by using
>
> data<-ReadAffy(cdfname="hu6800cdf")  but it still returns the same error.
>
> The version of R that I'm using is 2.15 and the bioconductor version is
> 2.10.
>
> Does anyone know how to solve this?
>
> Thanks,
>
> srod
>
> --
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>
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