[R] what folder to run write_PACKAGES in?
Uwe Ligges
ligges at statistik.tu-dortmund.de
Wed May 9 15:56:32 CEST 2012
On 09.05.2012 01:14, Jeff Newmiller wrote:
> I have not done this myself, but reading through your book I see no reference to actual sample file names. I mention this because UNIX-ish operating systems download the tar.gz source archives while Windows works with the zip binary packages, and I can't tell what files you are putting in the repository.
> ---------------------------------------------------------------------------
> Jeff Newmiller The ..... ..... Go Live...
> DCN:<jdnewmil at dcn.davis.ca.us> Basics: ##.#. ##.#. Live Go...
> Live: OO#.. Dead: OO#.. Playing
> Research Engineer (Solar/Batteries O.O#. #.O#. with
> /Software/Embedded Controllers) .OO#. .OO#. rocks...1k
> ---------------------------------------------------------------------------
> Sent from my phone. Please excuse my brevity.
>
> Paul Johnson<pauljohn32 at gmail.com> wrote:
>
>> I set up a local repo for testing packages. My packages are not
>> showing up from the repository when viewed by Linux clients. I suspect
>> this is a web administrator/firewall issue, but it could be I created
>> the repo wrongly. I am supposed to run write_PACKAGES separately in
>> each R-version folder. Right?
>>
>> Maybe other novices can use these scripts, if they are not wrong :)
>>
>> Here's the file structure. On the file space that the Web server can
>> see, I create a folder "/tools/kran" and directories
>>
>> bin
>> macosx
>> leopard
>> contrib
>> 2.13
>> 2.14
>> 2.15
>>
>> windows
>> contrib
>> 2.13
>> 2.14
>> 2.15
>> src
>> contrib
>> 2.13
>> 2.14
>> 2.15
For source packages, you do not need the versioned subfolders and you
have to have a PACKAGES (or a compressed alternative) in /src/contrib.
Uwe ligges
>> That's created by this:
>> #############################################
>> create_repo_tree<- function(local.repos, rversions){
>>
>> folders<- c("/bin/windows/contrib",
>> "/bin/macosx/leopard/contrib", "/src/contrib")
>> for(dir in folders){
>> dirs<- paste(local.repos, dir, "/", rversions, sep='')
>> lapply(dirs, dir.create, recursive = TRUE, showWarnings = TRUE)
>> }
>> }
>>
>> create_repo_tree("/tools/kran", c(2.13, 2.14, 2.15))
>> ###########################################
>>
>> My CRAN mirror is in a sister folder /tools/cran and that works
>> properly to be served at the address http://rweb.quant.ku.edu/cran.
>>
>> I want our local testing thing to show at similar
>> http://rweb.quant.ku.edu/kran. Supposing the Apache web server magic
>> is done, I *believe* the following should work.
>>
>> I dropped packages in the right version folders, and I wrote a script
>> that goes separately to each version number folder and runs
>> write_PACKAGES.
>>
>> ### Researchers can upload
>> ### packages into the approrpriate folder.
>> ### Administratively, we schedule this run run every night
>> write_PACKAGES_wrapper<- function(local.repos) {
>> require(tools)
>>
>> rversions<- dir(path = paste(local.repos,
>> "/bin/windows/contrib", sep=""), full.names = TRUE)
>> for (i in rversions) write_PACKAGES(dir = i, subdirs=TRUE,
>> type="win.binary")
>>
>> #repeat
>> rversions<- dir(path = paste(local.repos,
>> "/bin/macosx/leopard/contrib", sep=""), full.names = TRUE)
>> for (i in rversions) write_PACKAGES(dir = i, subdirs=TRUE,
>> type="mac.binary")
>>
>> rversions<- dir(path = paste(local.repos, "/src/contrib",
>> sep=""), full.names = TRUE)
>> for (i in rversions) write_PACKAGES(dir = i, subdirs=TRUE,
>> type="source")
>> }
>>
>>
>> write_PACKAGES_wrapper("/tools/kran")
>>
>> #############################
>>
>> Right?
>>
>> After running that, I do see the PACKAGES files appear under the
>> version number directories.
>>
>> However, from the linux clients I see this:
>>
>>> install.packages("rockchalk", repos="http://rweb.quant.ku.edu/kran")
>> Installing package(s) into
>> ‘/home/pauljohn/R/x86_64-pc-linux-gnu-library/2.15’
>> (as ‘lib’ is unspecified)
>> Warning: unable to access index for repository
>> http://rweb.quant.ku.edu/kran/src/contrib
>> Warning message:
>> package ‘rockchalk’ is not available (for R version 2.15.0)
>>
>> The Web administrator here suggests I've done the write_PACKAGES
>> incorrectly because there is no PACKAGES file in
>> /tools/kran/src/contrib. But I do have PACKAGES files in the
>> subfolders 2.15.
>>
>>
>> However, on a windows system, it does work.
>>
>>> install.packages("rockchalk", repos="http://rweb.quant.ku.edu/kran")
>> trying URL
>> 'http://rweb.quant.ku.edu/kran/bin/windows/contrib/2.15/rockchalk_1.5.5.06.zip'
>> Content type 'application/zip' length 486682 bytes (475 Kb)
>> opened URL
>> downloaded 475 Kb
>>
>> package ‘rockchalk’ successfully unpacked and MD5 sums checked
>>
>> The downloaded binary packages are in
>> C:\Users\pauljohn32\AppData\Local\Temp\Rtmpq0m3Id\downloaded_packages
>>
>> The Web admin folks say to me, "if we did it wrong, nothing would
>> work. Some does, so it is your fault."
>>
>> --
>> Paul E. Johnson
>> Professor, Political Science Assoc. Director
>> 1541 Lilac Lane, Room 504 Center for Research Methods
>> University of Kansas University of Kansas
>> http://pj.freefaculty.org http://quant.ku.edu
>>
>> ______________________________________________
>> R-help at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
More information about the R-help
mailing list