[R] Error w/ Start up Script

[Lopez, Dan]

David,

Sorry I should have been more specific. They are not as much errors as they are extra script that is running at startup after "Type q() to quit R". It wasn't there before. And am thinking eventually it could become a problem.

Thanks.
Dan

Here it is again...what it looks like when I first startup R (partial copy and paste):

....
...
..
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Attempting to load the environment 'package:R.utils'
R.methodsS3 v1.2.2 (2010-11-17) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.9.3 (2012-03-18) successfully loaded. See ?R.oo for help.

Attaching package: 'R.oo'

The following object(s) are masked from 'package:R.methodsS3':

    throw.default
..
...
....
-----Original Message-----
From: David Winsemius [mailto:dwinsemius at comcast.net] 
Sent: Monday, June 18, 2012 12:12 PM
To: Lopez, Dan
Cc: R help (r-help at r-project.org)
Subject: Re: [R] Error w/ Start up Script


On Jun 18, 2012, at 11:25 AM, Lopez, Dan wrote:

> I noticed about a couple weeks ago that my R start up script starting 
> showing the below errors, following the line "Type 'q()' to quit R"
>

I didn't see any errors reported. I didn't see any warnings, either.

--
David.

> Not sure what I did different and so far it hasn't caused major 
> problems but kind of fear that it will.
>
> Can you please help?
> I also posted my Rprofile below.
>
> Attempting to load the environment 'package:R.utils'
> R.methodsS3 v1.2.2 (2010-11-17) successfully loaded. See ? 
> R.methodsS3 for help.
> R.oo v1.9.3 (2012-03-18) successfully loaded. See ?R.oo for help.
>
> Attaching package: 'R.oo'
>
> The following object(s) are masked from 'package:R.methodsS3':
>
>    throw.default
>
> The following object(s) are masked from 'package:methods':
>
>    getClass, getClasses, getMethods
>
> The following object(s) are masked from 'package:base':
>
>    attach, detach, gc, load, save
>
> R.utils v1.12.1 (2012-03-20) successfully loaded. See ?R.utils for 
> help.
>
> Attaching package: 'R.utils'
>
> The following object(s) are masked from 'package:utils':
>
>    timestamp
>
> The following object(s) are masked from 'package:base':
>
>    cat, commandArgs, getOption, inherits, isOpen, lapply, parse,
>    warnings
>
> And here is my Rprofile.site file specs:
> # Things you might want to change
> # options(papersize="a4")
> # options(editor="notepad")
> # options(pager="internal")
>
> # set the default help type
> # options(help_type="text")
> options(help_type="html")
>
> # set a site library
> # .Library.site <- file.path(chartr("\\", "/", R.home()), "site-
> library")
>
> # set a CRAN mirror
> local({r <- getOption("repos")
>   r["CRAN"] <- "http://cran.cnr.Berkeley.edu"
>   options(repos=r)})
>
> # Give a fortune cookie, but only to interactive sessions # (This 
> would need the fortunes package to be installed.) #  if 
> (interactive())
> #    fortunes::fortune()
>
>
> Daniel Lopez
> Workforce Analytics & Metrics Team
>
>
>
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
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> PLEASE do read the posting guide 
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

David Winsemius, MD
West Hartford, CT